Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi254g00026 ATGGCTGAAAATGTGTTGGAGCTCAACCTTGGTTTAGGGAACTTTTCTGGTCATTCAGGACAGTCCCCTAGGCCAAGGTGCCCTGCACCATTTCTGTTAAAGACCTATGATTTGTTGGAAGAAGGTGAGGTGGATGGTGCAGCTGAAGATGGCACTAAAATTGTGTCATGGAATGCTGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAACTCACCTTGCCTAGATATTTCAAGCACAACAATTTCTCTAGCTTCATTCGCCAATTGAATACATATGTTAATTATATCAACTAA 306 0.4216 MAENVLELNLGLGNFSGHSGQSPRPRCPAPFLLKTYDLLEEGEVDGAAEDGTKIVSWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYVNYIN 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi254g00026 101 SMART hsfneu3 27 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi254g00026 101 SUPERFAMILY "Winged helix" DNA-binding domain 28 97 IPR036390 -
Sebi254g00026 101 Gene3D - 25 98 IPR036388 -
Sebi254g00026 101 Pfam HSF-type DNA-binding 31 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi254g00026 101 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 96 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi254g00026 Sebi-Chr254 633585 633997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi254g00026 27 96 HSF AT4G36990 61.429 2.31e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi254g00026 HSF_DNA-bind 3.4e-18 CL0123