Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi254g00024 ATGACAGTAGGGCAGAAAGTGTTGTTTGAACATCATGGAAATAATTATAGCTTTACAGTCAGTCAAGCAGCTGTTGAGGGCCAAGAAAAGTCAAATTCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTCGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTCAGTCTCTGGGTATTGGTGGTCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCCCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGTACTGGAAAGACCCTTATGGCTCGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTCAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGAACAGAGGACCAGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACCGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACAAAGATAGATGGTGTGGAGTCACTAAATAATGTGTTACTTATTGGAATGACTAACAGAAAGGACTTGCTTGATGAAGCTCTCTTGAGACCAGGGCGGTTGGAAGTCCAGGTGGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTCAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGCGTTGTGAAAAGTGCTGTTTCATATGCTTTGAATAGACAATTGAGTCTAGAAGATCTTACTAAGCCAGTGGAGGAAGAGAATATTAAGGTCACGATGGATGACTTTTTGAATGCACTCCAAGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGACCTTGAAAGATGCAGACTCCACGGCATGGTGGACTGTGGTGATCGACATAAGCACATTGCTCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCTAGTGGCAGTGGTAAAACCGCACTTGCAGCTACAGTTGGTATTGAGAGTGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCTATGATTGGTCTACATGAGAGCACTAAATGTGCACAAATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGCGTTATTATTCTTGATGACATTGAGAGGTTATTGGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTTGTCCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAGCTCATGGTTATTGGTACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACCTTGAACACAGATGATGCAAAGAAGGTCCTAAAACAGTTGAACGTTTTTGCTGATGAAGATGTTGATTCTGCAGCAGAGGCCTTGAATGATATTCCTATAAGGAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGAGCACAAGGCGGATCTGCAGAAGCTATCTATTCTGGCAGAGAGAAGATGAATATATCTCATTTCTATGATTGCCTTCAGGATGTTGTCAGAATATAA 1815 0.4116 MTVGQKVLFEHHGNNYSFTVSQAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIAQRAMLLVEQVKVSKGSPLVTCLLEGSSGSGKTALAATVGIESDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELGFLDSIGFCDTFSVTYHVPTLNTDDAKKVLKQLNVFADEDVDSAAEALNDIPIRKLYMLIEMAAQGAQGGSAEAIYSGREKMNISHFYDCLQDVVRI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi254g00024 604 Gene3D - 259 346 - -
Sebi254g00024 604 FunFam vesicle-fusing ATPase isoform X1 355 526 - -
Sebi254g00024 604 ProSitePatterns AAA-protein family signature. 228 246 IPR003960 GO:0005524|GO:0016887
Sebi254g00024 604 CDD RecA-like_NSF-SEC18_r1-like 80 256 - -
Sebi254g00024 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 356 IPR027417 -
Sebi254g00024 604 SUPERFAMILY Cdc48 domain 2-like 1 62 IPR029067 -
Sebi254g00024 604 SMART AAA_5 113 260 IPR003593 GO:0016887
Sebi254g00024 604 SMART AAA_5 393 531 IPR003593 GO:0016887
Sebi254g00024 604 Pfam ATPase family associated with various cellular activities (AAA) 398 511 IPR003959 GO:0005524|GO:0016887
Sebi254g00024 604 Pfam ATPase family associated with various cellular activities (AAA) 117 257 IPR003959 GO:0005524|GO:0016887
Sebi254g00024 604 FunFam Vesicle-fusing ATPase 259 346 - -
Sebi254g00024 604 Gene3D - 68 258 IPR027417 -
Sebi254g00024 604 Pfam AAA+ lid domain 284 339 IPR041569 -
Sebi254g00024 604 PANTHER VESICULAR-FUSION PROTEIN NSF 1 603 IPR039812 GO:0016887|GO:0035494
Sebi254g00024 604 FunFam Vesicular-fusion ATPase SEC18 69 259 - -
Sebi254g00024 604 Gene3D - 355 526 IPR027417 -
Sebi254g00024 604 Gene3D - 1 57 - -
Sebi254g00024 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi254g00024 Sebi-Chr254 610969 619243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi254g00024 18 332 Calmodulin-binding Proteins AT3G56690 29.338 1.57e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi254g00024 K06027 - gmx:100779259 1110.13