Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi254g00020 ATGGCGTTTGAGCACTACTTTTCCCAGGAATGGAAAGCCATCCCAAATGCTGTGACAGAGACAGAAAATTTTGATGGTTGTTTTGATTGCAACATCTGCCTAGACTTTGCACATGAACCAGTAGTTACCCTCTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAATGGCTCTATGTTCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGTAAGGATGATATATCCCATACCACAATGGTTCCTCTCTATGGTAGGGGCCAGACCCCAGCTGTTAGTGACCCTGATGGGAAGGCACCCGGTAGAGATAGGTTTATACCACCAAGACCATCTGCTTCAGGTGCTCAATCTCTGTTGGCAACATCTTCATCACAAAGTGGTCAGCAACTTCCATATCGTAATCCTTATCAGAATCAACATTTCAACTCCCCTCCATACCAAGAAGAGGATGATGAGACATCACAAATGCTCAATCCTGGTTCCAACATGACACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGGGAGATGTTTTGTACCCGAGTCTTTGGCAACTCAGAAAATTTGTACACCTACCCAAATTCTTATCCCCTGATGGGAAGTAATAGCCATAGGTTGAGAAGGCAGGAGATGCAGGCTGACAAATCATTGAACAGAATTTCAATTTTTCTCTTTTGCTGCTTTATTCTGTGTCTTATCGTCTTCTGA 726 0.449 MAFEHYFSQEWKAIPNAVTETENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEHPQCPVCKDDISHTTMVPLYGRGQTPAVSDPDGKAPGRDRFIPPRPSASGAQSLLATSSSQSGQQLPYRNPYQNQHFNSPPYQEEDDETSQMLNPGSNMTPGFPHLVVGMFGEMFCTRVFGNSENLYTYPNSYPLMGSNSHRLRRQEMQADKSLNRISIFLFCCFILCLIVF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi254g00020 241 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Sebi254g00020 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 96 IPR013083 -
Sebi254g00020 241 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Sebi254g00020 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi254g00020 241 MobiDBLite consensus disorder prediction 88 167 - -
Sebi254g00020 241 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Sebi254g00020 241 SUPERFAMILY RING/U-box 23 89 - -
Sebi254g00020 241 SMART ring_2 30 76 IPR001841 -
Sebi254g00020 241 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Sebi254g00020 241 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi254g00020 Sebi-Chr254 500167 500892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi254g00020 12 227 C3H Transcription Factor Family AT4G27470 40.625 7.31e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi254g00020 K10666 - gmx:100779793 363.614