Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00100 ATGGTGAAGGGACTGGATAATTTATCCTTTTCCACAGATTATGGAAGCAGTACTGGTCCTGAAAGTGAAAGTGGTGATGAAGGTGGTTTAGGTGATGGAGGTGGAACTGGTGATGAAGGTGGTTCAAGTGATGGAGGTGGAAGCGGTAATGAAGGTTATTCAGATACATGGACTGAATATGATGGTAATGTGTCCGATTATCAAGAGTGTTCTGCTAGCGATGGTAGACATGATACACTTAACGATGATGATATGGAAAATGCAACGAAAATTGGGATAAACAGTATGGGTGATATTGGTAAGATAGACTTGGTGACTTTTAGTCCTCATCTGATAACCAAGTATGACTTTCCTAGTTTGGATATGGCATACAAGTTCTACTGTCGCTATGCTAAAGCAAATGGGTTTAGTGTTAGAAGAGGAAGAATCTTACGCAGCAAGAAAACAGGGGAGGCCCTACAGCAAGATTTGTGGTGTTCTAATAAAGGTTTCCGGGAGGATAGGGGCCTTAAAATGGAAGATAGGAAGCGCGAGATAAGACCAGAAACCAGATGTGACTGTCGAGCAAATTTTCGAATTCATGTTGATAAAGTTACAAATCGTTGGTATGCAACGGTTTTTTATGATGAGCATAGTCATCCTTTATTGGACAAAAGGTATTCTGGTATGCTTCCCGGACATCGCAAGATGTCTGAAAGTGATATAATTCAAATGAACAGCTTGTTGCAGGCAGGTATTAGCCCTGCTCACATTTTTGGGCATTTTGCTTTGCAATGCGGAGGTTATGAGAAAGTTGGGTTTAGGCTGAAGGACATATATAATCAGATTGAACGCCAAAGACGAAAGCAATGTTCGGATGCCATGGCTGCAATAGAATATTTGGGTGAGTTAGGTAAGAAGGATGAAATAATGTACTGTGAGCACACCATTGATGAGGAAGGTGACTATGATGTGGGTGAATTTCGTCAAAAGTGGATCGAGTTGGTTTCTAAGCTTGGCTTGCAAGAGCATCCATGGGTAAAAAAAATCTATGATTCAAGGTCAAAGTGGGCAAGTGCTTATTTTCGTGGAAATTTCTTTGCTGGCTTTAGAACGACTTCAAGATGTGAAAGTTTGCATGCTGAGTTAGGGAAGTATGTCCATTCCCGTTATAACTTGACCGATTTTTTGCAACATTATCATCGTTGCCTTAGTCATATGCGGTACAAAGAAATGGCAGATGATTTTTGTTCTTTACATGGTGTGCCTGTATTACAATCGAAGTTTCCAGCTATTGAAAAGTCGGCAGGGAAGCATTATACTAGGAGGGTGCTCAATGTCTTTCGGGTTCTTCTTAATAAGGCAGGTGAAATGATTATTTCTGATTGCAAAGAAATGCTGATGAGTTTAATGTATACGGTGTGTAAGAGGGGAGTAGATGTGAAGGTATGGCGTGTGTCTTTTTATCCGTCAACCTATGAGTTTAAGTGTTCATGTTTGTGGATGGAATCACGAGGTTTGCCATGCGAGCATATAATTGCTGTGATGCATCATCTAAACATTGAAGAGCTGCCAAAGTCATTAGTTTTGAGGAGATGGTCAAAAGGTGCAAAGGATGGTATCCAGACTTGTGGTGCTGAGGACACAAACTGCTGGGACACCCACAAGATTTGCAGAAAAGCTGTCCTTTCTGAATATTGCGACATATGGATTGAGCTAAATGCTGATACATATGAAGAATTTAATGAAGCAAAGGAAAGCATTGCACGTGACATTGAGGGAAAAAAGGCAAAGAAAGCTCAACAAAACATGACAGGTACGTCTACAAATTCAATTAATGATGATGTATTGAGAAACCCATTGCGTGCTAGTACAAAAGGTAGGGGTACTCCAAGTTCATCAAGTTGGGGTGTGAGAGTGAAGAGGAGGACCCATTGCTCATATTGCAAACAAAGTGGGCATAATAGGGTTACGTGCCCAGCAAAAATCCGGAACTCACAAATGACACAGACCACTACGTCTAGCCTGCACCATGGAGATGATGAAACTGGTTATTATGAATCTGAGGGTTTTGATCACAGCAGTGTTGCTGCAAATTAA 2079 0.4098 MVKGLDNLSFSTDYGSSTGPESESGDEGGLGDGGGTGDEGGSSDGGGSGNEGYSDTWTEYDGNVSDYQECSASDGRHDTLNDDDMENATKIGINSMGDIGKIDLVTFSPHLITKYDFPSLDMAYKFYCRYAKANGFSVRRGRILRSKKTGEALQQDLWCSNKGFREDRGLKMEDRKREIRPETRCDCRANFRIHVDKVTNRWYATVFYDEHSHPLLDKRYSGMLPGHRKMSESDIIQMNSLLQAGISPAHIFGHFALQCGGYEKVGFRLKDIYNQIERQRRKQCSDAMAAIEYLGELGKKDEIMYCEHTIDEEGDYDVGEFRQKWIELVSKLGLQEHPWVKKIYDSRSKWASAYFRGNFFAGFRTTSRCESLHAELGKYVHSRYNLTDFLQHYHRCLSHMRYKEMADDFCSLHGVPVLQSKFPAIEKSAGKHYTRRVLNVFRVLLNKAGEMIISDCKEMLMSLMYTVCKRGVDVKVWRVSFYPSTYEFKCSCLWMESRGLPCEHIIAVMHHLNIEELPKSLVLRRWSKGAKDGIQTCGAEDTNCWDTHKICRKAVLSEYCDIWIELNADTYEEFNEAKESIARDIEGKKAKKAQQNMTGTSTNSINDDVLRNPLRASTKGRGTPSSSSWGVRVKRRTHCSYCKQSGHNRVTCPAKIRNSQMTQTTTSSLHHGDDETGYYESEGFDHSSVAAN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00100 692 MobiDBLite consensus disorder prediction 660 692 - -
Sebi253g00100 692 MobiDBLite consensus disorder prediction 593 611 - -
Sebi253g00100 692 MobiDBLite consensus disorder prediction 1 58 - -
Sebi253g00100 692 PANTHER OS01G0519700 PROTEIN 317 621 - -
Sebi253g00100 692 MobiDBLite consensus disorder prediction 9 23 - -
Sebi253g00100 692 ProSiteProfiles Zinc finger SWIM-type profile. 482 513 IPR007527 GO:0008270
Sebi253g00100 692 SMART 26again6 488 515 IPR006564 GO:0008270
Sebi253g00100 692 Pfam SWIM zinc finger 489 513 IPR007527 GO:0008270
Sebi253g00100 692 MobiDBLite consensus disorder prediction 589 631 - -
Sebi253g00100 692 Pfam FAR1 DNA-binding domain 125 216 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00100 Sebi-Chr253 1075060 1077722 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi253g00100 FAR1 1.1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00100 - - vvo:131661205 325.479