Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00098 ATGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCAAGCCAAGCTTATGATAGACAAAGAATCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCAGAATCGGCTGTGAAAGATATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAACTGCAAAGCCCATATCATCAAGAAGTTGGAAGAGGACAACAGCCTACAAATTTTGA 231 0.3766 MKVFSEFGEVTQAKLMIDKESGQSLGFAYIWFVKEESAESAVKDMNGKFFDGRFIYVTTAKPISSRSWKRTTAYKF 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00098 76 SUPERFAMILY RNA-binding domain, RBD 2 68 IPR035979 GO:0003676
Sebi253g00098 76 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 62 IPR000504 GO:0003723
Sebi253g00098 76 SMART rrm1_1 1 58 IPR000504 GO:0003723
Sebi253g00098 76 Gene3D - 1 75 IPR012677 -
Sebi253g00098 76 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 2 70 - -
Sebi253g00098 76 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 55 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00098 Sebi-Chr253 1050765 1051262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00098 4 75 Eukaryotic Initiation Factors Gene Family AT4G34110 34.722 1.03e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00098 - - gmx:100791917 121.709