Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00089 ATGGCCGCCACCTCAGCAGCCATGGATCAATTTGACGAATCCATGAAGAAACAAATGTCATCACTTTTGCGGGCTATGTTTTTAGTTAAATCCCTCAAAGAGGACAATACTTCTTGTGAAATTGACGAGGGTCTCCTTTTGGGTTCCGTTGGCACTGCGGCTAACAAGGATGGTTTGAAAAATGTAAATATCACTCACATTTTGACTGTGGCTGGTAAATTGACACCTGCGCATCCTGGGGATTTTGTCTATAAAGCTATAGATGTTGCTGACAGAGATGATGCCAACTTAAAGCAATACTTCAACGAATGTTTTGATTTTATTGATGAAGCCAAAAGACATGGTGGACGGGTTCTGGTTCATTGTTATGCTGGAAAATCAAGGAGTGTGACTATTGTAGTGGCATATCTGATGAAGACTCGTGGAATGAGCTTATCTGAAGCTTTGCAACATGTAAAGAGCAAACGGCCACAAGCAGCTCCAAATCCTGGTTTTATTCGTCAACTGGAGGAGTTTGAAAAATCTCTTCAAGGTGCGCAAGTCCCTCTAGAAGAATAA 558 0.4176 MAATSAAMDQFDESMKKQMSSLLRAMFLVKSLKEDNTSCEIDEGLLLGSVGTAANKDGLKNVNITHILTVAGKLTPAHPGDFVYKAIDVADRDDANLKQYFNECFDFIDEAKRHGGRVLVHCYAGKSRSVTIVVAYLMKTRGMSLSEALQHVKSKRPQAAPNPGFIRQLEEFEKSLQGAQVPLEE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00089 185 Gene3D Protein tyrosine phosphatase superfamily 39 183 IPR029021 -
Sebi253g00089 185 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
Sebi253g00089 185 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 35 176 - -
Sebi253g00089 185 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 38 178 IPR029021 -
Sebi253g00089 185 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 178 IPR020422 GO:0006470|GO:0008138
Sebi253g00089 185 CDD DSP 39 171 - -
Sebi253g00089 185 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Sebi253g00089 185 Pfam Dual specificity phosphatase, catalytic domain 47 174 IPR000340 GO:0008138|GO:0016311
Sebi253g00089 185 FunFam Dual specificity phosphatase 12 39 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00089 Sebi-Chr253 918429 921598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00089 40 178 Protein tyrosine phosphatase (PTP) family AT3G06110 61.871 1.75e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00089 - - lang:109352945 280.026