Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00075 ATGGCTCTGTTAGACGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGATAGACAACTTTTTTTGCTTGAAACTGTGCGGGTGCTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTTTCTTCGGAAAATTTTGACTTCATATTCATCTTGCAATAACCGCCAGACGGTTTTTGCCAGTGCATCTATACCACAGCACAACCGATTTCTTCATGACTGTGTGCAGCAAAAATGGACTAAGAGTGATGTGATTCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATGATATGTGATAAGAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTTATTGACTTTCTGAAAACATCATATCAAGGTTCTTTAGATATCCTCCTTCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCAGAAGTGTCTCACATATACAACTTTGATCTGCCAAAGACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATGAATTGTACTGTTACTAGCATTATAGTTTCAGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTATTTGTGAAGAGCTTATACCATAA 879 0.4061 MALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLDRQLFLLETVRVLVVDEVDFIFNSSKQVSFLRKILTSYSSCNNRQTVFASASIPQHNRFLHDCVQQKWTKSDVIHIHVSAVEPMPSRLYHRFMICDKKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLLIDFLKTSYQGSLDILLLEDDMNFNSRAASLLEVRKGGGHLLVATDIAARGVDLPEVSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMNCTVTSIIVSEERFVLQRYENELMFICEELIP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00075 292 SMART helicmild6 172 256 IPR001650 -
Sebi253g00075 292 Pfam Helicase conserved C-terminal domain 135 254 IPR001650 -
Sebi253g00075 292 Gene3D - 1 113 IPR027417 -
Sebi253g00075 292 CDD SF2_C_DEAD 125 254 - -
Sebi253g00075 292 Pfam DEAD/DEAH box helicase 4 90 IPR011545 GO:0003676|GO:0005524
Sebi253g00075 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 279 IPR027417 -
Sebi253g00075 292 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 106 IPR014001 -
Sebi253g00075 292 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 135 292 IPR001650 -
Sebi253g00075 292 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 283 - -
Sebi253g00075 292 Gene3D - 120 289 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00075 Sebi-Chr253 817286 820522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00075 6 290 Eukaryotic Initiation Factors Gene Family AT1G72730 27.055 5.01e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00075 - - ahf:112763379 528.865