Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00063 ATGCAGCCTGGTATGGCTCCACCGACCATGGCCCAACAGCCCAATCAGCAATATCAACAGCAGCAACAACCTTACATGATGATGCCGCCACAGCCTCAGCCTCAGCCTCCTCCGATGTGGGCCCCATCTGCCCAGCCTCCGGTTCAGTCGGTCCCTCCTCCACATTCGGTTCAGCCTGCCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTACAACTGTTTCGCTCACACCGGTGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAGCAAACGAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCGGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCAAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGCGACTTGGCTGCGGATGTTACAGATTATCTTCTGCAGGACACATTTAGAACCCGGTATCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACAGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCGATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGTCAAAAGTATCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACGGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGTGCAGAGGAGGCTTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTGCTGGACAGGACCCCAATATGTATGGCGGTTATCAAGGGTATGCTCAGCAACAGCAGCGAATAGGATATAGTTGA 1179 0.4716 MQPGMAPPTMAQQPNQQYQQQQQPYMMMPPQPQPQPPPMWAPSAQPPVQSVPPPHSVQPASADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQDTFRTRYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQSKVSYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPAGQDPNMYGGYQGYAQQQQRIGYS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00063 392 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 58 340 - -
Sebi253g00063 392 MobiDBLite consensus disorder prediction 1 59 - -
Sebi253g00063 392 FunFam Polyadenylate-binding protein RBP45 7 150 - -
Sebi253g00063 392 Gene3D - 158 234 IPR012677 -
Sebi253g00063 392 SUPERFAMILY RNA-binding domain, RBD 26 147 IPR035979 GO:0003676
Sebi253g00063 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Sebi253g00063 392 MobiDBLite consensus disorder prediction 27 54 - -
Sebi253g00063 392 FunFam Polyadenylate-binding protein RBP45C 151 242 - -
Sebi253g00063 392 MobiDBLite consensus disorder prediction 1 26 - -
Sebi253g00063 392 Gene3D - 5 156 IPR012677 -
Sebi253g00063 392 Gene3D - 241 345 IPR012677 -
Sebi253g00063 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Sebi253g00063 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 329 IPR000504 GO:0003723
Sebi253g00063 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Sebi253g00063 392 SUPERFAMILY RNA-binding domain, RBD 150 244 IPR035979 GO:0003676
Sebi253g00063 392 SMART rrm1_1 160 234 IPR000504 GO:0003723
Sebi253g00063 392 SMART rrm1_1 67 142 IPR000504 GO:0003723
Sebi253g00063 392 SMART rrm1_1 265 332 IPR000504 GO:0003723
Sebi253g00063 392 SUPERFAMILY RNA-binding domain, RBD 249 360 IPR035979 GO:0003676
Sebi253g00063 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Sebi253g00063 392 FunFam Polyadenylate-binding protein RBP45C 243 368 - -
Sebi253g00063 392 CDD RRM1_SECp43_like 67 147 - -
Sebi253g00063 392 MobiDBLite consensus disorder prediction 233 263 - -
Sebi253g00063 392 CDD RRM2_SECp43_like 158 237 - -
Sebi253g00063 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 336 IPR000504 GO:0003723
Sebi253g00063 392 MobiDBLite consensus disorder prediction 230 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00063 Sebi-Chr253 694773 713845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00063 67 343 Eukaryotic Initiation Factors Gene Family AT4G34110 28.723 2.88e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00063 - - aprc:113864230 637.876