Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00062 ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCTCAACAGTCCAACCAGCAATACCAACAGCAGCAACCACCCTACATGATGATGCCGCCACAGCCTCAAGCTCAGCCTCCTCCGATGTGGGCCCCATCTGCCCAGCCTCCGGTTCAGTCGGTCCCTCCTCCACAATCGGTTCAACCTGCCAGCGCTGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTACAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCTAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGCGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAAGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCGATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGAGTTGGACCAGCCTCTAACAAAAACCCGGGCACTCAGTCAAAAGCTCAATGCTATGCAATTGAAGTTATTTTTGTCGGCAATTTGGATCCTAATGTTACAGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCGGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGTGCAGAGGAGGCGTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTTCTGGACAGGACCCCAATATGTATGGCGGTTATCAAGGGTATGCAAATTACCAACCCCCTCAGCAACAGCAGCAAATAGGATATAATTGA 1164 0.4648 MMQPGMPPPTMAQQSNQQYQQQQPPYMMMPPQPQAQPPPMWAPSAQPPVQSVPPPQSVQPASADEIRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRVGPASNKNPGTQSKAQCYAIEVIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPSGQDPNMYGGYQGYANYQPPQQQQQIGYN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00062 387 SUPERFAMILY RNA-binding domain, RBD 255 350 IPR035979 GO:0003676
Sebi253g00062 387 MobiDBLite consensus disorder prediction 26 55 - -
Sebi253g00062 387 FunFam Polyadenylate-binding protein RBP45 8 151 - -
Sebi253g00062 387 CDD RRM1_SECp43_like 68 148 - -
Sebi253g00062 387 CDD RRM2_SECp43_like 159 238 - -
Sebi253g00062 387 Gene3D - 159 235 IPR012677 -
Sebi253g00062 387 MobiDBLite consensus disorder prediction 1 59 - -
Sebi253g00062 387 SMART rrm1_1 161 235 IPR000504 GO:0003723
Sebi253g00062 387 SMART rrm1_1 255 322 IPR000504 GO:0003723
Sebi253g00062 387 SMART rrm1_1 68 143 IPR000504 GO:0003723
Sebi253g00062 387 MobiDBLite consensus disorder prediction 368 387 - -
Sebi253g00062 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Sebi253g00062 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 319 IPR000504 GO:0003723
Sebi253g00062 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Sebi253g00062 387 SUPERFAMILY RNA-binding domain, RBD 153 245 IPR035979 GO:0003676
Sebi253g00062 387 SUPERFAMILY RNA-binding domain, RBD 27 147 IPR035979 GO:0003676
Sebi253g00062 387 MobiDBLite consensus disorder prediction 8 25 - -
Sebi253g00062 387 MobiDBLite consensus disorder prediction 373 387 - -
Sebi253g00062 387 FunFam Polyadenylate-binding protein RBP45C 152 240 - -
Sebi253g00062 387 Gene3D - 6 155 IPR012677 -
Sebi253g00062 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Sebi253g00062 387 Gene3D - 251 370 IPR012677 -
Sebi253g00062 387 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 330 - -
Sebi253g00062 387 FunFam polyadenylate-binding protein RBP45 241 334 - -
Sebi253g00062 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Sebi253g00062 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 326 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00062 Sebi-Chr253 680233 684000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00062 68 333 Eukaryotic Initiation Factors Gene Family AT4G34110 29.520 2.82e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00062 - - aprc:113864230 572.392