Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00033 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGAAGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGGAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAGATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGATTCTGATGTCATGTCTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATATCTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAGCACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATAATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGATAAAGAAGGAAATCTCGTTGATCAATGTGATGACCAGCAAATTGGGTCTAAAAATCAGTCAAGAATGAGGAAAGATAATAATGTAAAAGGGAAAGGTACTGGTTCTTTCAAAATGAAGGAGAAAACGGTAAATCGGTCAACACATAATTCAGTGAAGCAGCTTAAAATTGAACCTATGGTTTCTTCAAGTGATGCTAATGCTGACAATCCCCAACACCAAAATTCAAACCCTGTTTATGCAACAACCAGCCAAGGAGTTAATATATCACCTCATCATGGTGGGGGGGACCCTATAATTCCATTGGGTTCTTTAAATGGAGTTAATACCCTTTATCCCCAAAGGGTGTGTGTGTTACCCCAACAGCAAAACTTTACAAATGTTTATGGACCAATAAGCCAGGGAGCTAATATCTTACCTCATCACGGTGGAGTTTCTAATAACCCTCAAGTTCCCCAAGTTGCATTTTTTCCTCAAAGGCCTCAGGTATGTCTTGGAATGAGTTGTTGGAAGAGGTCACTAAAAATGGAGGTGTTAAGCATGGCAATCCATCATGACAAAGAATTCTGTGATGTCCAATGTTGTTGTGCCTCTCTCGTCGTTGGCTATTAG 1575 0.3867 MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSEEHACKFYDSYARCHGFVARKDDIKRDAEDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPRYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKDSDVMSGAAAAACNRLCSIAREKNACFNDILNDIFKLLNKYENQGDPNSTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDNQVPMDGDSSHSDGDGFTIGEENDKEGNLVDQCDDQQIGSKNQSRMRKDNNVKGKGTGSFKMKEKTVNRSTHNSVKQLKIEPMVSSSDANADNPQHQNSNPVYATTSQGVNISPHHGGGDPIIPLGSLNGVNTLYPQRVCVLPQQQNFTNVYGPISQGANILPHHGGVSNNPQVPQVAFFPQRPQVCLGMSCWKRSLKMEVLSMAIHHDKEFCDVQCCCASLVVGY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00033 524 MobiDBLite consensus disorder prediction 298 357 - -
Sebi253g00033 524 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Sebi253g00033 524 ProSiteProfiles Zinc finger CCHC-type profile. 276 293 IPR001878 GO:0003676|GO:0008270
Sebi253g00033 524 MobiDBLite consensus disorder prediction 313 329 - -
Sebi253g00033 524 MobiDBLite consensus disorder prediction 1 32 - -
Sebi253g00033 524 Gene3D - 261 336 - -
Sebi253g00033 524 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 208 - -
Sebi253g00033 524 SMART c2hcfinal6 277 293 IPR001878 GO:0003676|GO:0008270
Sebi253g00033 524 Pfam Zinc knuckle 277 292 IPR001878 GO:0003676|GO:0008270
Sebi253g00033 524 SUPERFAMILY Retrovirus zinc finger-like domains 268 299 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00033 Sebi-Chr253 349756 353202 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi253g00033 FAR1 2.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00033 - - ccaj:109792835 226.483