Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00015 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCAGTTGATAATTCAGGTTCTGCCCCAACGGCAAATGGTGGGGTTGAGTTGGATTCGTCAATCTTTTTGAAGAAAGCACATGAGCTGAAAGAAGAAGGGAATAAGAGATTTCAGAACAAGGACTATGGGGGTGCTCTTGAACAATATGAGAATGCCCTTCGACTAATCCCCAAAACGCACCCTGATAGAGCGGTTTTCCACAGCAATAAGGCCGCATGTTTGATGCAAATGAAGCCCATAGATTATGAAGCTGTAATTTCTGAGTGCACCATGGCACTTCAGGTCCAGCCCCGATTTGTCCGGGCTCTTCTTCGGAGAGCCCGGGCTTTTGAGGCTGTGGGCAAGTATGAAATGGCTGTTCAAGATGTTCAGTTCTTATTGGGAGCTGACCCTAATCACCGAGATGCTTTGGAGATTGCCCAGAGATTGAGGACTGCATTGGGACCTCGCCAGGAAGCCCAGCAGGACCTCCACAGTCGCCCTTCTCCTGCTGCCCTTGGTGCTTCTGCCGTACGAGGTGCACCTATTGCTGGATTGGGCCCATGTTTGCCAGCCCGGCCGGTACCAAAGAAGGGAGCAAATTCAGCAGTTCCTAATAACAAACTAGACAAGTCCCAACCAGTTTTACCTACTGAAAATGGTCCAGAGACTAAGTCCCAGTTGCCAAAACTTGTGTTGAAGCCTTCAAATGGTTCTGTAAAGCCATCTAACCTGAAAAATGAAAACCAGAAGGAACAGTCATCTCATTCATCAACTATTCATGGCCAGCATTCAGAAGTCACAATTCGGTGGAGGCCATTGAAGCTTGTGTATGATCATGACATTAGGCTTTCCCAGATGCCTGTGAATTGCACTTTTAGAGTGCTACGAGATTTAGTAAGCAAAAGATTTCCTTCATCAAATTCCGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGATTACTATAACCTCTACTAATGAACTCAGATTGGCAGAGTCTACTGTTGATAGCCATCTCCTTAAAGATCCTGAAGCAGATCAAAGTGACTCCGTTGCGATGCTGAGACTACACATTGTTGAAGTTAGTCCAGAGCAGGAGCCACCTTTATTGGATGAAGAGGAAGAAAAACCTGTTGAGAATGAAGGGATCAAGGGAGATGAGACTCATGAGAGTGGTTCTCATTCTTCCCTGGGTGAATCTGCCTCTGAAGTTCATGATACTGAGGTTGATAAGATAGGGAAGGAGGCTCCAAAGGAAAAGCCAGGAACCACAGGGGACACTGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGAATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTAACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCTGCATTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCTGCTAGGAAGCGGATCCCCCTAGATGAGTCAGCTGGGAAGGATGTAGTGGCAGAACAGCTTCAGGTGGCTTATGACTGGGTCAAGGAAAAATATTCTTTGGCAAAAGAGAAGTATGAAGAAGCACTCTTGATCAAACCAGACTTCTATGAGGGACTGTTGGCTCTGGGGCAACAACAATTTGAAATGGCTAAACTTCATTGGTCTTTCGCACTTGCTAAGAAGATAGATTTATCAGGCTGGGATTCTGCAGAGACCCTTCAACTTTTTGACAGTGCAGAAGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAGCTGGAGGAACAGAGAGCAAAGGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAACTATTGAGAAGAAGAAAGAAACAGGGAAGTGCTAATGAAGGTGAGTCCTCCAGTGTTGGTGGTCAGGGTGAGATATCTGCAGAAGAAGCTGCAGAGCAAGCAGCTGTCATGAGATCACAGATTCATCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAGGTTGAATGCAAATTAGGAATGAGTGGTTGGAAGAAAAACCTGGATGCTGCAACCGAACGCTTCAAGCTTGCAGGAGCTTCTGAGGCAGATATTTTGATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGAAGGAGATGATAAAAAGGTCCAGAACCCACAACCCAATGAGACTGGTGAGCAAGAGACCAATAAAGCTAATCAAGTATGA 2298 0.4543 MGKSGGRRKKGGSVDNSGSAPTANGGVELDSSIFLKKAHELKEEGNKRFQNKDYGGALEQYENALRLIPKTHPDRAVFHSNKAACLMQMKPIDYEAVISECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLGADPNHRDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVPKKGANSAVPNNKLDKSQPVLPTENGPETKSQLPKLVLKPSNGSVKPSNLKNENQKEQSSHSSTIHGQHSEVTIRWRPLKLVYDHDIRLSQMPVNCTFRVLRDLVSKRFPSSNSVLIKYKDCDGDLITITSTNELRLAESTVDSHLLKDPEADQSDSVAMLRLHIVEVSPEQEPPLLDEEEEKPVENEGIKGDETHESGSHSSLGESASEVHDTEVDKIGKEAPKEKPGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAKEKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSAETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGSANEGESSSVGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKKNLDAATERFKLAGASEADILMVLKNHCSNGDAKEGDDKKVQNPQPNETGEQETNKANQV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00015 765 MobiDBLite consensus disorder prediction 735 765 - -
Sebi253g00015 765 ProSiteProfiles PB1 domain profile. 276 368 IPR000270 GO:0005515
Sebi253g00015 765 MobiDBLite consensus disorder prediction 369 436 - -
Sebi253g00015 765 CDD PB1 279 338 - -
Sebi253g00015 765 SUPERFAMILY TPR-like 35 169 IPR011990 GO:0005515
Sebi253g00015 765 MobiDBLite consensus disorder prediction 1 27 - -
Sebi253g00015 765 Pfam PB1 domain 276 367 IPR000270 GO:0005515
Sebi253g00015 765 SMART tpr_5 38 71 IPR019734 GO:0005515
Sebi253g00015 765 SMART tpr_5 112 145 IPR019734 GO:0005515
Sebi253g00015 765 SMART tpr_5 76 111 IPR019734 GO:0005515
Sebi253g00015 765 ProSiteProfiles TPR repeat profile. 38 71 IPR019734 GO:0005515
Sebi253g00015 765 MobiDBLite consensus disorder prediction 210 269 - -
Sebi253g00015 765 MobiDBLite consensus disorder prediction 384 400 - -
Sebi253g00015 765 SUPERFAMILY TPR-like 485 581 IPR011990 GO:0005515
Sebi253g00015 765 MobiDBLite consensus disorder prediction 192 269 - -
Sebi253g00015 765 Coils Coil 605 625 - -
Sebi253g00015 765 Gene3D Tetratricopeptide repeat domain 35 166 IPR011990 GO:0005515
Sebi253g00015 765 MobiDBLite consensus disorder prediction 735 749 - -
Sebi253g00015 765 SUPERFAMILY CAD & PB1 domains 273 346 - -
Sebi253g00015 765 PANTHER PROTEIN CLMP1 1 757 IPR044517 -
Sebi253g00015 765 MobiDBLite consensus disorder prediction 408 436 - -
Sebi253g00015 765 SMART PB1_new 276 368 IPR000270 GO:0005515
Sebi253g00015 765 Gene3D - 278 348 - -
Sebi253g00015 765 MobiDBLite consensus disorder prediction 625 651 - -
Sebi253g00015 765 MobiDBLite consensus disorder prediction 625 666 - -
Sebi253g00015 765 MobiDBLite consensus disorder prediction 750 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00015 Sebi-Chr253 156648 158945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00015 35 159 Calmodulin-binding Proteins AT3G25230 29.412 3.04e-10 61.6