Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00011 ATGCACTTTGCTAGAGCTTCAATGGCGGGTTCATGTTTCCATGCGCTTCGCTTAAGGAGGTCAAAGAGTAAAGCTTTACCAGAGCCTTCTTCTTCTTCATCCAAGACCCGGTTCAATTCTGATGTAGAGAACATGGAAAGGAAAAGATTTGATAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCTTCAAAGGAGGATCAAGAGGAATGGACTGCAGACCTTTCTCAACTTTTCATAGGTAACAAATTTGCATCTGGGGCTCACAGTCGAATTTACCGTGGAATTTACAAACAGAGAGCTGTTGCTGTGAAAATGGTGAGAATTCCAAACCAGAACGAGGAGAGAAGAGCCTTGCTAGAACAACAATTCAAATCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCCTAACATAGTGCAGTTCATTGCAGCGTGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACACTGAGGATGTATCTGAACAAGAAAGAGCCTTACTCTCTATCAGTAGAAACTGTACTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACCTCAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGATTTTGGAACATCATGTCTTGAGACACGGTGCCGGGAGACCAAAGGAAACATGGGAACATATCGTTGGATGGCACCAGAGATGATTAAGGAAAAACCATATACTCGTAAAGTTGATGTGTATAGTTTTGGAATTGTGCTTTGGGAACTCACAACCGCTCTACTTCCTTCCAAGGAATGA 864 0.4225 MHFARASMAGSCFHALRLRRSKSKALPEPSSSSSKTRFNSDVENMERKRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRALLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSVETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPSKE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00011 287 Gene3D Phosphorylase Kinase; domain 1 74 166 - -
Sebi253g00011 287 Pfam Protein tyrosine and serine/threonine kinase 87 280 IPR001245 GO:0004672|GO:0006468
Sebi253g00011 287 SMART serkin_6 85 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi253g00011 287 CDD STKc_MAP3K-like 92 287 - -
Sebi253g00011 287 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 67 284 - -
Sebi253g00011 287 SUPERFAMILY Protein kinase-like (PK-like) 62 284 IPR011009 -
Sebi253g00011 287 FunFam Serine/threonine-protein kinase isoform 1 75 167 - -
Sebi253g00011 287 Gene3D Transferase(Phosphotransferase) domain 1 167 287 - -
Sebi253g00011 287 PRINTS Tyrosine kinase catalytic domain signature 201 219 IPR001245 GO:0004672|GO:0006468
Sebi253g00011 287 PRINTS Tyrosine kinase catalytic domain signature 247 257 IPR001245 GO:0004672|GO:0006468
Sebi253g00011 287 PRINTS Tyrosine kinase catalytic domain signature 163 176 IPR001245 GO:0004672|GO:0006468
Sebi253g00011 287 PRINTS Tyrosine kinase catalytic domain signature 266 287 IPR001245 GO:0004672|GO:0006468
Sebi253g00011 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Sebi253g00011 287 ProSiteProfiles Protein kinase domain profile. 85 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00011 Sebi-Chr253 126743 127968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00011 8 284 MAP Kinase Kinase Kinase AT1G62400 85.614 2.03e-179 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi253g00011 PK_Tyr_Ser-Thr 6.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00011 - - gmx:100799437 539.65