Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi253g00002 ATGTCTGTCACCGAAACCCCCGGTCTCCAACACCGTCACCCGTCGAAGCGAAAATTCGACGATGAGGAAGAAGATGTCTCTGACCTAGTTTGTGTCAGAATGAGGAAGGAAGAGGCCAAGGTGGTTAACTCGTGGTCTTCGGGTTGCGGTGGCGAGTTACAAAGATCGCACTTGCAATTCTTCGTTCGAATGATGTCAGGAGGTAACACTATTGTTATGCAGGCTTATCCGGAAGAAACCGTGAAATCTATTCACGAACGCATTCATATTATGAAAGGAATTCCCCTTTTCGAGCAGAGGTTAATTTACAGGGGAAAACAGCTTCAGTGGGAACAGACTCTCGCCGAGTGTTCCATCCAAAACGACGCCAACCTTCAACTCGTGGGTCGTATGCGCAGCACCGAACACCCCCAGGCGTGGCAGGTCATAAACGACATGGTTTCTCTCGTTTATCGTCTCTGCCGCGGCGAAACTGTTCACGATGCTTTGAAGACCGTTAAGGGCCTCATCACCAGTTACCTCACCATGACACCCAGAATCGACAACGATTCTGCCACTGGGTATTTTCAGATTTTCATGTCTTCCTCTGCCCCTGCGGTGCTGGTCATGCTCTATGTCTCCCCCTATCCAGGTAACAAGAATTGTGCTGATTCTTCTGTTAGGCATTTCTTGAATTCTTGTCGTAATACCTTGTCCAAGGCACTGCACACCCAGTGTGCGCGTGTGGTTTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGCTCTCACGACCCTTTGTATCTCTTTTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGTATTTCCTATGCTGCTTCTGAGAGTGAAAATGTTAAAGGATCAATTTTGATTCAAGACATTTTCCCCTTTGTGCGTGAGCTTGCTAATAGCTTGTTGTCGGATTTGGATTTGAGTATGGAGACCCCCTCTGTTGCTGGGTCTTTGTTGAACGACGTTGGGGATTTTACTGCCTTCTTAATCCCTTTGAGGACTGGAATCAGGGAGCAACGAGCTCTCCAAGATTCTATGACTCACCAGAAGCGCCATAAGGACATGTTGCTCGTTGAAGAGATTGAATACCTTCATCTCTTGTACATTGAGTTATTGAACAAAATTGATCAGTGCCTTTCAAAATTGGAGAAAAGTTTGGCTGGCCAGGAAATGATGCAAGGGGATAATCTTTGTCCTGCATGGTCTCAGTATCTTTTCATTTTGAAGGAATTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGATGCGTCAAAAGAATGTGCTGTGTCAACTCATCGTTCAATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTTAAGCACAGGTCTGTCACGAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTAAAAGAAGATTATGAGGACCTGCATGAGATGCTTATTGACAGGTCTCACTTACTGACTGAATCTTTTGAATACATAGCACGAGCTGAGCCCGAATCTCTGCATGCCGGCTTATTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAACTGATCGAAGGAGATTTTTCCCTAATCCTGATGCATTAGGATTGACGTTTGTTAGAGAGGTTGAGGAATTAGGACACAGGAAAGTGGTTGAACTCTGCCCTGGTGGGAAAAGCATTGTAGTAAATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAAGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGTTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATAACTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCGGAACAGAGGAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATTTACAAATCCCTTGAACCTGGTGATCACCTGCCTTCATCTCACACATGCTTTTACCGGCTGTGTTTCCCAGCGTATTCATCTATGGCTGTCATGCAAGATCGTCTTGATGTCATTACTCAAGAACATGTTGGCTGCAGTTTTGGTACTTGGTGA 2328 0.4403 MSVTETPGLQHRHPSKRKFDDEEEDVSDLVCVRMRKEEAKVVNSWSSGCGGELQRSHLQFFVRMMSGGNTIVMQAYPEETVKSIHERIHIMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLITSYLTMTPRIDNDSATGYFQIFMSSSAPAVLVMLYVSPYPGNKNCADSSVRHFLNSCRNTLSKALHTQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGISYAASESENVKGSILIQDIFPFVRELANSLLSDLDLSMETPSVAGSLLNDVGDFTAFLIPLRTGIREQRALQDSMTHQKRHKDMLLVEEIEYLHLLYIELLNKIDQCLSKLEKSLAGQEMMQGDNLCPAWSQYLFILKELYQISKLYDGAEEKLWSVLMRQKNVLCQLIVQYAKRTDEHQWILKHRSVTNFESRRHLAMMMFPEVKEDYEDLHEMLIDRSHLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFVLVCQAIFNPQNALFVACPTDRRRFFPNPDALGLTFVREVEELGHRKVVELCPGGKSIVVNSKNREKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKLQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFRGLASRLYIYKSLEPGDHLPSSHTCFYRLCFPAYSSMAVMQDRLDVITQEHVGCSFGTW 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi253g00002 775 PRINTS Ubiquitin signature 90 110 IPR019956 -
Sebi253g00002 775 PRINTS Ubiquitin signature 111 132 IPR019956 -
Sebi253g00002 775 PRINTS Ubiquitin signature 69 89 IPR019956 -
Sebi253g00002 775 Gene3D Hect, E3 ligase catalytic domain 658 773 - -
Sebi253g00002 775 ProSiteProfiles Ubiquitin domain profile. 58 134 IPR000626 GO:0005515
Sebi253g00002 775 SMART hect_3 508 773 IPR000569 GO:0004842
Sebi253g00002 775 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 567 773 - -
Sebi253g00002 775 SMART ubq_7 58 130 IPR000626 GO:0005515
Sebi253g00002 775 Gene3D Hect, E3 ligase catalytic domains 490 567 - -
Sebi253g00002 775 ProSiteProfiles HECT domain profile. 510 568 IPR000569 GO:0004842
Sebi253g00002 775 Gene3D Hect, E3 ligase catalytic domains 618 649 - -
Sebi253g00002 775 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 52 146 - -
Sebi253g00002 775 ProSiteProfiles HECT domain profile. 571 775 IPR000569 GO:0004842
Sebi253g00002 775 MobiDBLite consensus disorder prediction 1 21 - -
Sebi253g00002 775 Gene3D Hect, E3 ligase catalytic domain 568 617 - -
Sebi253g00002 775 Pfam Ubiquitin family 61 132 IPR000626 GO:0005515
Sebi253g00002 775 SUPERFAMILY Ubiquitin-like 59 146 IPR029071 -
Sebi253g00002 775 Pfam HECT-domain (ubiquitin-transferase) 481 767 IPR000569 GO:0004842
Sebi253g00002 775 Gene3D - 52 149 - -
Sebi253g00002 775 FunFam E3 ubiquitin-protein ligase UPL5 659 774 - -
Sebi253g00002 775 SUPERFAMILY Hect, E3 ligase catalytic domain 485 761 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi253g00002 Sebi-Chr253 21575 25922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi253g00002 58 132 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 6.61e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi253g00002 - - gmx:100789233 1120.53