Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi252g00075 ATGCCAATCTTCTCGTTTTTATCTCACTGTTTCGTCCCTAATGGAAGTAGAAACCACCCTTCCATATCAATTGGTTCTGAGGTGAAGGGTAGCCAGTTGATGCCTGTGAATTCTGAGGATCCAAGCATCGCTGATCAAATGGTGTCTATGGATTCTAAGGTTCCAAGCAGATGGAGTGAACCAGTGCCTGTGATCTCTGAACTACCTAGCAGCCATGGTCAATCAATGTCGGTTGGTTCTGAGGTGCTTAACGGTCAGAGCCACATAAGTGAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAACAATTTTGACCCTAGCAAAATACTTGGAAGTGGAGGCTATGGGACAGTATACTCTGGAATACTTAAAGATGGACGTTGCGTTGCAATAAAGCGCTTGCATGAAGACAAGTTCAAGATCATAAGGTTCCATGATAAGAAGCTTGAGGGGGAGAGACACAGAGTATTCATGAATGAAGTTTCAATGTTAACTTGCTTGAGGCATGAAAATCTTGTCCAACTGTATGGCTGCACCTCACCTCAGAGCCGTGAACTGCTTCTTGTGCAAGAATACATTCCCAATGGAACCGTTGCTAGTCATCTTCGTGGTAAAAAAAGAACCTTCCCATGGTCTACTCGACTAAACATCGCCATACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAACATTATCCACCGCGATGTGAAAACCAGTAATATTCTGCTTGATAGAAGTTTGAATGCCAAAGTTGCAGACTTTGGATTGTCACGCCTTATCCCACATGGTGTTACTCATATTACTACTGATCCTGCTGGGACTCCAGACTTTGCCATGGATAAAATCATTTGTGGACAAGTCCAGAAGCTTGTTGACCCACATCTTGGATTTGAATCAAACAGCTGGACAAGTGAAACAATTACTGCAGTGTCTGAGTTGGCATTTAGCTGTCTACAACCTCAAAGAGACATGAGACCTTCCATGGGAGAGGTGTTAAATACTCTTGAGAGCATTAGAAGTGGAAGCTCTCAAAATGATCTTGCATGGGGTTCAAATAGTTGTTACAATGCCACCAAAGTTCATGTTGTGTCTCGCTTGCCTGATGATTATTTTGAGAAGAAATAG 1134 0.4277 MPIFSFLSHCFVPNGSRNHPSISIGSEVKGSQLMPVNSEDPSIADQMVSMDSKVPSRWSEPVPVISELPSSHGQSMSVGSEVLNGQSHISEIFKYSELEEATNNFDPSKILGSGGYGTVYSGILKDGRCVAIKRLHEDKFKIIRFHDKKLEGERHRVFMNEVSMLTCLRHENLVQLYGCTSPQSRELLLVQEYIPNGTVASHLRGKKRTFPWSTRLNIAIQTASALAYLHASNIIHRDVKTSNILLDRSLNAKVADFGLSRLIPHGVTHITTDPAGTPDFAMDKIICGQVQKLVDPHLGFESNSWTSETITAVSELAFSCLQPQRDMRPSMGEVLNTLESIRSGSSQNDLAWGSNSCYNATKVHVVSRLPDDYFEKK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi252g00075 377 SUPERFAMILY Protein kinase-like (PK-like) 87 342 IPR011009 -
Sebi252g00075 377 SMART serkin_6 105 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi252g00075 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Sebi252g00075 377 Gene3D Phosphorylase Kinase; domain 1 80 193 - -
Sebi252g00075 377 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 279 354 IPR044652 GO:0004672
Sebi252g00075 377 Pfam Protein kinase domain 108 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi252g00075 377 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Sebi252g00075 377 ProSiteProfiles Protein kinase domain profile. 105 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi252g00075 377 Gene3D Transferase(Phosphotransferase) domain 1 284 357 - -
Sebi252g00075 377 Gene3D Transferase(Phosphotransferase) domain 1 194 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi252g00075 Sebi-Chr252 1256109 1258052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi252g00075 92 343 Receptor kinase-like Gene Family AT1G25390 45.395 1.11e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi252g00075 Pkinase 4.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi252g00075 - - tpra:123887372 515.383