Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi252g00047 ATGGCGACGCCGTTAACGGGGTTGCAGCACTTGGACGGAGGCGGAGGAGTGGCGGTGCTTTCGAATCGTGTGAGCAATGTCGATTCTTCCTCCAATGGCAGTGGCGGCGGCGGCTTCAACAGCTCCTTATTGGAATCGCCAATTCTGATTTTCTCCTTCTTCCACAAAGCGATTAGGAACGAGCTCGATGCGCTCAACCGATTGGCCATGGCTTTCGCCACCGGTAACCGCTCCGACATCCGCCCTCTCTCCGAACGTTACCATTTCCTCAGATCGATGTACAGACACCACTCCAATGCCGAAGATGAGGAAGAAGAGGAAGAACCAACCCAAAACTCAGTTGAAAGAGGTTTGAACAAGCACCCAAAACCAGTACACCCAGAAAAAGCAGCCACAACAGAAGAAACTCTAGATAAACGTGTGAAGAATGTAGCACAGACATATTCTCTGGAGCACAAGGGTGAAAGTGATCTTTTTGACCATCTATTTGAGCTGTTGAACTCTTCCATCCCTAATGATGAAAGTTTCCCAAAGGAGTTAGCATCCTGTACGGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAGGAGCAGCAAGTATTTCCGCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCCATATCCCCTGATGAATCTCAGGATCTGCGGAAATGCTTAAGCAAGATAGTGCCAGGAGAAAAGCTTCTTCAAAAGGTTATTTTCGCCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCGGTGTAGTCCTAGTCCTTTAACCCATCAGATTGGGAAAACAAAATGTGCATGCGAGTCCACAGCAACTGGGAAAAGGAAATATTCTGAATCTATGCAGAGACCAGAAAGATACAACATTCTGGAGATTTTGCTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTTCATATATCACAGTGTTAGAAGTGTACAACAAGGAATGGTTAATTGATCATTTCTATGAATGCAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAGTTTTCTTTCTTTCAAGAGCATGCTGAAGAAGAAAGTCAATTTAATGACTTCCGGTCTTTGATTGAAAGTATTCAAAATGAAGGAGAAACATCTAGTTCAGAAGCTGAATATTTTTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATAGAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTGTGTATCAAAGCTTGTGCGTGATGCCTTTGAAATTGATTGAGCGTGTCCTACCATGGTTGATTAGATCAATAGCTAAAGATGAATCAGAGATGTTTCTGAAAAACATGCAACTGGCAGCTCCAGCAACAGATTCTGCTTTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTATGTTTGTCTCCAAGTGCATCAGGTTGCTGTCCTGGTAAACATATTGTCCGGTCCACTTGTATATGTGCTTCGGAATTGTCTGGTAGAGATTGCTCAGTATTAACTGAATCAGATGAAACCCAAAGATCAACCAAGAGAAACATAAAGGAGTTGCATGAAAATGGAGACATCCCTAAAACATCAGAAAATGACAATATCCAGAAACAATGTTGTAGTGCCCGATCTTGTTGTGTTCCAGGTTTAGGAGTCAGTAGTAACAATCTGGGACTGAGTTCACTTTCTACAGCCAAGTCCTTGCGCTCCTTGTCTTTCACCTCTTCTGCTCCATCTCTTAATTCTAGTCTATTCATATGGGAAACAGATAGCAGCTCATGTAATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTTCATATAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATTATTCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCTTATATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGACATTTCTTGTGTTCTTTCTGAGCTTTCTGTGCTTCATGAAGCCTTGCAGAGGACCCATGCATCAGAGGATTTAAGTGAAAGTAATTTTGGAATTTCTGATGCCAATGATAATGATAATATCAGAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATAAGAGTGACCCTTGATCAGCATATTTTCAGGGAAGAACTTGAGCTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAGGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCAGCAACTCTATCACGGACAGAAACATCAGAGCATAGCACTTCTCAAAGAGGTGCTGACTATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAAGTTTATCGAGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAACAGAAGTTACCTAAAGCTCTATCAGGGGAATCATCTAATAAACAAATAGAAGGATGCTCACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTACAAGAGAAATTGCAAACTTCGAGCTGCTTGTTGTGGCAAAAAAGCAACATTGGAAATGATGTGTATGCACTGCCTGACTATACAACCTGTTGGGCCAGTATGCATGTCACCTTCATGTAATGGACTTTCGATGGCAAAGTACTATTGCAACATTTGCAAGTTTTTTGACGATGAAAGGAATGTTTATCATTGCCCATTTTGCAATATCTGCCGTGTCGGACAAGGGCTTGGGGTTGATTATTTCCACTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAACGTCTCACAAGTGCCTTGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGTGCAACTGTCAGAGCTCTACCTTGTGGGCATTACATGCATTCGTCTTGCTTTCAGGCATATACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCACTGGGAGATATGGCAGTTTACTTTGGTATGCTTGATGCTTTGTTAGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGGATGA 3522 0.4191 MATPLTGLQHLDGGGGVAVLSNRVSNVDSSSNGSGGGGFNSSLLESPILIFSFFHKAIRNELDALNRLAMAFATGNRSDIRPLSERYHFLRSMYRHHSNAEDEEEEEEPTQNSVERGLNKHPKPVHPEKAATTEETLDKRVKNVAQTYSLEHKGESDLFDHLFELLNSSIPNDESFPKELASCTGALQTSVSQHMAKEEQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPGEKLLQKVIFAWMEGRSSANTVENCVDHSQVRCSPSPLTHQIGKTKCACESTATGKRKYSESMQRPERYNILEILLICLLLMKGCNSLLKFSYITVLEVYNKEWLIDHFYECSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIESIQNEGETSSSEAEYFSKLCSHADHIMETIERHFHNEEVQVLPLARKHFSFKRQRELVYQSLCVMPLKLIERVLPWLIRSIAKDESEMFLKNMQLAAPATDSALVTLFSGWACKARKDGLCLSPSASGCCPGKHIVRSTCICASELSGRDCSVLTESDETQRSTKRNIKELHENGDIPKTSENDNIQKQCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFTSSAPSLNSSLFIWETDSSSCNVGSAERPIDTIFKFHIAIRKDLEYLDVESGKLCDGDETIIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSELSVLHEALQRTHASEDLSESNFGISDANDNDNIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWATKNTMFNEWLNECLKESPATLSRTETSEHSTSQRGADYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKALSGESSNKQIEGCSPSFRDPEKQVFGCEHYKRNCKLRAACCGKKATLEMMCMHCLTIQPVGPVCMSPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGVDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQG 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi252g00047 1173 ProSiteProfiles Zinc finger RING-type profile. 1099 1141 IPR001841 -
Sebi252g00047 1173 MobiDBLite consensus disorder prediction 111 136 - -
Sebi252g00047 1173 CDD Hr-like 374 451 - -
Sebi252g00047 1173 Gene3D nmb1532 protein domain like 46 104 - -
Sebi252g00047 1173 Gene3D nmb1532 protein domain like 361 470 - -
Sebi252g00047 1173 Gene3D nmb1532 protein domain like 132 224 - -
Sebi252g00047 1173 ProSiteProfiles Zinc finger CHY-type profile. 981 1060 IPR008913 GO:0008270
Sebi252g00047 1173 Pfam Hemerythrin HHE cation binding domain 661 824 IPR012312 -
Sebi252g00047 1173 SUPERFAMILY Zinc hairpin stack 1036 1092 IPR037275 -
Sebi252g00047 1173 Gene3D nmb1532 protein domain like 657 878 - -
Sebi252g00047 1173 CDD RING-H2_Pirh2-like 1098 1141 - -
Sebi252g00047 1173 CDD Hr-like 663 823 - -
Sebi252g00047 1173 ProSiteProfiles Zinc finger CTCHY-type profile. 1035 1098 IPR017921 -
Sebi252g00047 1173 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 704 1171 - -
Sebi252g00047 1173 MobiDBLite consensus disorder prediction 98 136 - -
Sebi252g00047 1173 SMART ring_2 1099 1140 IPR001841 -
Sebi252g00047 1173 SUPERFAMILY RING/U-box 1096 1151 - -
Sebi252g00047 1173 FunFam Zinc finger protein-related isoform 1 1094 1143 - -
Sebi252g00047 1173 CDD Hr-like 50 204 - -
Sebi252g00047 1173 Pfam Ring finger domain 1098 1140 IPR001841 -
Sebi252g00047 1173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1092 1143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi252g00047 Sebi-Chr252 873224 883809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi252g00047 1 1172 C2H2 Transcription Factor Family AT3G18290 59.952 0.0 1415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi252g00047 K16276 - gmx:100791354 1889.39