Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi252g00039 ATGTGTACTCCTTTAAAGAGTGTCACCTCTTCTGGAGAAGATAATAATGAACTTAGAAGAGGACCTTGGACTCTTGAAGAGGATGATTTGCTCATCAAATACATTGCTAATCATGGAGAAGGAAGATGGAATTTGCTAGCTTTGCATTCAGGATTAAGGAGAACAGGGAAGAGCTGCAGATTAAGATGGCTAAATTATCTAAAGCCAGATATTAAGAGAGGAAACTTAACCTCAGAAGAGCAACTTTTAATTTTTGAACTTCATTCAAAATGGGGGAACAGGTGGTCAAAAATTGCACAACACTTGCCAGGAAGAACAGATAATGAAATAAAAAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGACATTTGAAAATTGACACAAACAAAACAGGATCTCTAGAAATTGTTAAACGTTTAAAGATGATAAGATGCCTTCAGAAAGCAAAAGAATCATCTCCTTCAGCTATGTCAATCCAAAACCAAGCAATTCCTTTGCCTCTTGATGATGTTTCTCATTATGCACCAATTGAGACTATACCAACACAAATCCCTTGTCAAGGAGCTTGTGTGAATGAAGGAGGTCCCAATTATTTGTATCAGCATGAGCAGAACTCAGACTCTGAGCACAACAATAGTCCATGCATATCCTCTTCAGAATCAGCAAATATGTCAAACAATAACATGACTCAACCTTTGGAATGTCAATTTCAGGCCTTAAATAACAGTGACTTTGGCATCTATGTATATGATGGTTACCAAATTAATAATAATGTTAATGAGAGTGGTGCATTCAACCAGACAATGATTACTGAGGATTTGGAATGCACAATGGGTGATTACCAGATACCAGAAAGCAATTGGCTAGACAAGGATTTTTCATATAGCACGTGGAACATGAATGATTTGTGGCAAATTAGGAACATACAAAATTAA 939 0.3642 MCTPLKSVTSSGEDNNELRRGPWTLEEDDLLIKYIANHGEGRWNLLALHSGLRRTGKSCRLRWLNYLKPDIKRGNLTSEEQLLIFELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTNKTGSLEIVKRLKMIRCLQKAKESSPSAMSIQNQAIPLPLDDVSHYAPIETIPTQIPCQGACVNEGGPNYLYQHEQNSDSEHNNSPCISSSESANMSNNNMTQPLECQFQALNNSDFGIYVYDGYQINNNVNESGAFNQTMITEDLECTMGDYQIPESNWLDKDFSYSTWNMNDLWQIRNIQN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi252g00039 312 MobiDBLite consensus disorder prediction 1 20 - -
Sebi252g00039 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 227 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sebi252g00039 312 MobiDBLite consensus disorder prediction 1 17 - -
Sebi252g00039 312 SMART sant 72 120 IPR001005 -
Sebi252g00039 312 SMART sant 19 69 IPR001005 -
Sebi252g00039 312 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Sebi252g00039 312 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Sebi252g00039 312 Gene3D - 20 72 - -
Sebi252g00039 312 CDD SANT 77 116 IPR001005 -
Sebi252g00039 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Sebi252g00039 312 Gene3D - 77 119 - -
Sebi252g00039 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Sebi252g00039 312 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Sebi252g00039 312 MobiDBLite consensus disorder prediction 201 225 - -
Sebi252g00039 312 FunFam Myb transcription factor 20 72 - -
Sebi252g00039 312 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Sebi252g00039 312 CDD SANT 22 67 IPR001005 -
Sebi252g00039 312 FunFam MYB transcription factor 76 118 - -
Sebi252g00039 312 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi252g00039 Sebi-Chr252 759091 760198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi252g00039 15 308 MYB Transcription Factor Family AT1G68320 43.189 1.50e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi252g00039 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi252g00039 K09422 - gmx:778042 409.453