Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi252g00038 ATGGAACTCCTAAATCAATTCATAGGGATAAACTCACAACATGTCATGGATAACTCAAACTTGAACATGCAGAACTTGATGCCTTTCTCCTGTGACAGCATCTTGGGCCCTCAAGAGCCTGAGTTTCCAGGAAACTTGGAAGAAAATTTTCCTGGTCTTCTTGTCCATCATGTCAATCACAATGCAGTTCCACTTTCCCTTCCAATTTTTCCATCAGAAAATGAAATCCATCAAGGTAAAAAGAGGAAAACAATGGATCTTCCAGAGACAAGCTCAGCAAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGACAAAACATAGTTCTGGAAGAGGAAAGAGAGCAAAAAGCAATGTAACAGAAGAGGAGAAAGCAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAAGTGCTTACAGAATATTGTTCCAGGATGCTACAAGACTATGGGTATGGCTGTAATGTTGGATGAAATCATAAACTATGTCCAGTCTTTGCAGCATCAAGTAGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGAGCATCCGAGGCAAAAGAGTTAAACAAGTATAAGAGAGAAGGATATGGAGGAATTTCTTGCTTTCAACCAACTTGGCCTCTTTGA 750 0.4013 MELLNQFIGINSQHVMDNSNLNMQNLMPFSCDSILGPQEPEFPGNLEENFPGLLVHHVNHNAVPLSLPIFPSENEIHQGKKRKTMDLPETSSANSTPAVSESGSKTKHSSGRGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELNKYKREGYGGISCFQPTWPL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi252g00038 249 Pfam Helix-loop-helix DNA-binding domain 142 189 IPR011598 GO:0046983
Sebi252g00038 249 FunFam transcription factor BEE 3-like 135 206 - -
Sebi252g00038 249 MobiDBLite consensus disorder prediction 88 106 - -
Sebi252g00038 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 204 IPR036638 GO:0046983
Sebi252g00038 249 Gene3D - 138 200 IPR036638 GO:0046983
Sebi252g00038 249 MobiDBLite consensus disorder prediction 77 144 - -
Sebi252g00038 249 MobiDBLite consensus disorder prediction 115 144 - -
Sebi252g00038 249 SMART finulus 144 194 IPR011598 GO:0046983
Sebi252g00038 249 CDD bHLH_AtBPE_like 128 213 - -
Sebi252g00038 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 188 IPR011598 GO:0046983
Sebi252g00038 249 Coils Coil 215 235 - -
Sebi252g00038 249 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 77 215 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi252g00038 Sebi-Chr252 745345 746774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi252g00038 60 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 56.109 2.30e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi252g00038 HLH 5.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi252g00038 - - gmx:100806942 437.573