Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi252g00032 ATGGGGGAAAATCTACCTCCTGGCTTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATGTTATCTTTCAAGGAAAGTGTCTGATACTGCTTTCACTTGTAAAGCTATAGCTGTTGTTGATCTCAACAAATCTGAACCTTGGGACCTCCCAGGTAAGGCCTCAATGGGGGAAAAGGAATGGTATTTCTTCAGCATGAGAGACCGGAAGTATCCAACTGGGCTTAGAACCAATCGAGCCACTGAATCAGGGTATTGGAAAACCACAGGGAAGGATAAGGAAATTTTTCGTGCTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGAGCTCCAAAGGGTGAGAAAAGCAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACTTTAGAACTTCAAAGGTAATTAGTATATAA 435 0.4207 MGENLPPGFRFHPTDEELITCYLSRKVSDTAFTCKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHHFRTSKVISI 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi252g00032 144 SUPERFAMILY NAC domain 3 137 IPR036093 GO:0003677|GO:0006355
Sebi252g00032 144 ProSiteProfiles NAC domain profile. 5 144 IPR003441 GO:0003677|GO:0006355
Sebi252g00032 144 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 133 - -
Sebi252g00032 144 FunFam NAC domain-containing protein 100-like 14 143 - -
Sebi252g00032 144 Gene3D NAC domain 14 142 IPR036093 GO:0003677|GO:0006355
Sebi252g00032 144 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi252g00032 Sebi-Chr252 645220 646604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi252g00032 1 137 NAC Transcription Factor Family AT3G18400 86.131 2.53e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi252g00032 NAM 3.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi252g00032 - - gmx:100787111 276.944