Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi252g00023 ATGAAAGGTGCAAGTGCATTAGGAGCCAAGACAGCAAGAGCTTGTGATAGCTGCTTAAGGGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCATTCCTTTGCCATGGTTGTGATAACTTGGTTCATTCTGCAAACCAATTAGCAAGCAGGCATGAAAGGGTTAGGCTTCAAACTGCTTCCTCTAAGGTCAATCACTCATTGACCACTGATAAGGTAAACTCACAGTCTCAAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAACAAACAACAACAACAACGCAAGGATATTCAAGTAGAAGCAGAAGGAGTGGTTTTCAACAACACAAACACCCTTCCTCTTGTGCCAGAGTTAGGAAGTGAAGAACCACTTCTTGATGATGAGACTGATCAGGAGCAACTTCTCTGTCGTGTTCCTGTGTTTGATCCTTTTGATGAAGGGTTCTGCAGTATATACAATGAAGTGAAGGATGAGACCATGAAAAACAATGATGTTGTTGCTGCTGCTGGTGAAGAAGAAGCAGATGAAGCCTTTGAATTGGACAACTTTAATTCAGAGTTTCTCCCATCAGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGTTGCAAAGAAGAAGATGTGATAGATGGTTATGTGAATGGACTTGGAGCCAAAGGTGCAATGGTGGTGAAGGTTAAGGATGAAGAACTTGAGGCTGATACATCTTGTCATTTGGATTCAATTCTTGACATGGACAGTGAGGTCTTTGATTGGAACATTGACTCATCAGAATCACTGGCACAAAAAGAGGCAGTTCCATTGGTAGCAAGTGACAGTACTAAAGTGGGTTCAAGTGAAGCAGATGTTCAATGTTGTTATGGGGAAGGAAGGAGCTTAATGGGGCAACCAATAGGAGGTGCAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACACGTTTGTTTGCAAAGAAGATAAGGTATGAAGTAAGGAAATTGAATGCAGAGAAAAGACCAAGAATGAAAGGTAGATTTGTCAAGAGAACATCCTTTGTTGGAGCCACTGCTTTGCAAGCTCAATTACCACTGACATCAAAGTGA 1122 0.4269 MKGASALGAKTARACDSCLRVRARWYCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSKVNHSLTTDKVNSQSQAWHSGFTRKARTPRHNKQQQQRKDIQVEAEGVVFNNTNTLPLVPELGSEEPLLDDETDQEQLLCRVPVFDPFDEGFCSIYNEVKDETMKNNDVVAAAGEEEADEAFELDNFNSEFLPSDLAEFAADVESLLGCKEEDVIDGYVNGLGAKGAMVVKVKDEELEADTSCHLDSILDMDSEVFDWNIDSSESLAQKEAVPLVASDSTKVGSSEADVQCCYGEGRSLMGQPIGGADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATALQAQLPLTSK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi252g00023 373 Pfam CCT motif 313 355 IPR010402 GO:0005515
Sebi252g00023 373 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Sebi252g00023 373 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Sebi252g00023 373 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Sebi252g00023 373 MobiDBLite consensus disorder prediction 59 84 - -
Sebi252g00023 373 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 357 - -
Sebi252g00023 373 MobiDBLite consensus disorder prediction 59 104 - -
Sebi252g00023 373 CDD Bbox1_BBX-like 14 57 - -
Sebi252g00023 373 SMART bboxneu5 10 57 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi252g00023 Sebi-Chr252 484113 485506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi252g00023 4 359 C2C2-CO-like Transcription Factor Family AT1G73870 39.474 8.79e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sebi252g00023 zf-B_box 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi252g00023 - - gmx:100802113 402.519