Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi251g00015 ATGGCTACTATGTTTTCTGTAGGTTCAGGCTCTGCTTTTCTTTTTCATAGCACAGGCTTGTCCTTGGTAACCAAAGGACCACTCCTTCAGCTGAAGAGGCCTCTCTCTGCAAAGTCAGTTGCTTCTTTGGGAACAGAGACATCAGTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGATGCAGGAAGAAGGTGTTATCTCTTCCAAGACCCCAGTGAAGGCTGCTGTTGTTCCAGAAGGCCTGGGACTGATTGCCCTCAAAGACATTTCTAGGAATGAGGTTGTTTTGCAGGTACCCAAGAGGCTGTGGATCAACCCTGATGCAGTGGCAGCTTCAGAGATTGGGAATGTGTGTAGTGGTTTGAAACCATGGTTGGCTGTTGCCCTCTTTCTGATTAGAGAGAGGTCAAGGGATGATTCTCGTTGGAAGCACTACTTCAGTATTCTGCCACAGGAAACTGATTCCACTATATATTGGTCAGAGGAGGAGCTCTCAGAGCTTCAAGGTACTCAACTTCTGAAAACAACACTCTCTGTGAAAGAATATGTGAAGAATGAATTTCTGAGACTGGAAGAAGAGATCATTCTCCCTAATAAGAAGCTTTTCCCTTCTCCTATAACACTGGATGACTTCTTCTGGGCATTTGGAATCCTCAGATCAAGGGCATTTTCTCGCCTCCGCAATGAAAATCTAGTTGTGATTCCACTAGCAGACTTGATAAACCACAGTGCCAGAGTAACTACAGAAGATCATGCTCAAGAAGTTAAAGGACCAGCAGGCCTTTTCTCTTGGGATTACCTATTTTCCCTAAGGAGCCCCCTTTCTCTCAAGGCTGGGGACCAGGTTTATATCCAGTATGATTTGAAAAAAAGCAATGCCGAGTTAGCTTTGGACTACGGTTTCATTGAACCAAATCCAGATCGGAATGCATATACCTTGACATTGGGGATATCTGAGTCAGACCCCTTTTTTGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATATTCTACAACTGTCCACTTCCACCAGGGTTGCTTCCATATCTGAGACTGGTGGCATTAGGGGGTACTGATGCTTTCTTATTGGAATCACTATTCAGAAACTCCATATGGGGTCATCTTGAATTGTCTGTGAGTCGTGACAATGAGGAGCTAATATGCCGAGTGGTTCGAGAGGCTTGCAAATCTGCCCTTTCTGGTTATCCCACAACCATTGAAGAGGTATGA 1254 0.4474 MATMFSVGSGSAFLFHSTGLSLVTKGPLLQLKRPLSAKSVASLGTETSVSPAVQTFWKWMQEEGVISSKTPVKAAVVPEGLGLIALKDISRNEVVLQVPKRLWINPDAVAASEIGNVCSGLKPWLAVALFLIRERSRDDSRWKHYFSILPQETDSTIYWSEEELSELQGTQLLKTTLSVKEYVKNEFLRLEEEIILPNKKLFPSPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEDHAQEVKGPAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLKKSNAELALDYGFIEPNPDRNAYTLTLGISESDPFFDDKLDIAESNGFGETAYFDIFYNCPLPPGLLPYLRLVALGGTDAFLLESLFRNSIWGHLELSVSRDNEELICRVVREACKSALSGYPTTIEEV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi251g00015 417 Gene3D set domain protein methyltransferase, domain 1 48 302 - -
Sebi251g00015 417 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 49 301 - -
Sebi251g00015 417 SUPERFAMILY SET domain 50 308 IPR046341 -
Sebi251g00015 417 CDD SET_RBCMT 64 302 IPR044431 GO:0016279|GO:0018022
Sebi251g00015 417 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 310 416 IPR036464 -
Sebi251g00015 417 Gene3D - 303 417 IPR036464 -
Sebi251g00015 417 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 414 - -
Sebi251g00015 417 Pfam SET domain 80 286 IPR001214 GO:0005515
Sebi251g00015 417 SMART set_7 70 293 IPR001214 GO:0005515
Sebi251g00015 417 Pfam Rubisco LSMT substrate-binding 319 416 IPR015353 -
Sebi251g00015 417 ProSiteProfiles SET domain profile. 63 287 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi251g00015 48 242 NAC Transcription Factor Family AT3G56570 29.268 2.41e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi251g00015 SET 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi251g00015 K00592 - gmx:100818113 714.146