Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi251g00010 ATGAGTTCCGGCAGCAGCACGGAGAAGGAGAAGGAAAAGGAGAAGGCAAGGGTGAGCCGCACATCGCTGATACTGTGGCACGCTCATCAAAACGACGCCGCAGCGGTTCGGAAGCTTCTTCAAGAGGATCCCTCGCTGGTGAACGCCAGAGATTACGACAATCGCACTCCGCTCCACGTGGCATCCCTCCACGGCTGGATCGACGTCGCCAATTGCTTAATTGAATTCGGCGCCGATCCTCTGGCTGATGCAGAAGGAGCTAAAAGGACTGATATGATCGAGCTTTTGAAATCACATGGAGGCTTGTCTTTTGGCCAAAACGGAAGCCATTTTGAACCCAGACCTGTTCCGCCCCCGTTGCCTAACAAGTGTGATTGGGAAATCGACCCTTCCGAATTGGACTTCACAAATGCGTTGCGTGTTGGAAAGGGATCTTTCGGTGAGATTTTGAAAGCCCATTGGCGTGGAACACCAGTTGCTGTCAAACGCATTCTTCCATCTCTTTTAGAAGATAGATTGGTCATTCAGGACTTTAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAACATAGTTCAGTTTCTTGGAGCTGTTACTGAGAAGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTGCTCTTAGTCCTTCTACAGCTATCAACTTTTCCATGGACATTGCCAGAGGAATGGCTTATCTTCACAATGAACCAAATGTTATAATACACAGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCTGACCATTTAAAAGTTGGAGATTTCGGATTGAGTAAGCTTATCACTGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACGGGGAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCCTATGAAGGAGCAAAACATGCTGCTGAAGGACACAGGCCTACTTTTTGGGCAAAGGGTTATGTCCCTGAATTGCAAGAGTAA 1113 0.4591 MSSGSSTEKEKEKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVNARDYDNRTPLHVASLHGWIDVANCLIEFGADPLADAEGAKRTDMIELLKSHGGLSFGQNGSHFEPRPVPPPLPNKCDWEIDPSELDFTNALRVGKGSFGEILKAHWRGTPVAVKRILPSLLEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKEKGALSPSTAINFSMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFASYEPYEGAKHAAEGHRPTFWAKGYVPELQE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi251g00010 370 SMART ANK_2a 53 82 IPR002110 GO:0005515
Sebi251g00010 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Sebi251g00010 370 PIRSF ILK 1 370 - -
Sebi251g00010 370 FunFam serine/threonine-protein kinase STY46-like 128 214 - -
Sebi251g00010 370 SMART serkin_6 135 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi251g00010 370 ProSitePatterns Protein kinases ATP-binding region signature. 141 162 IPR017441 GO:0005524
Sebi251g00010 370 SUPERFAMILY Protein kinase-like (PK-like) 114 361 IPR011009 -
Sebi251g00010 370 Pfam Ankyrin repeat 53 81 IPR002110 GO:0005515
Sebi251g00010 370 Gene3D - 2 100 IPR036770 -
Sebi251g00010 370 CDD STKc_MAP3K-like 141 358 - -
Sebi251g00010 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 65 360 - -
Sebi251g00010 370 Pfam Protein tyrosine and serine/threonine kinase 140 357 IPR001245 GO:0004672|GO:0006468
Sebi251g00010 370 ProSiteProfiles Protein kinase domain profile. 135 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi251g00010 370 Gene3D Transferase(Phosphotransferase) domain 1 215 362 - -
Sebi251g00010 370 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Sebi251g00010 370 Gene3D Phosphorylase Kinase; domain 1 120 214 - -
Sebi251g00010 370 ProSiteProfiles Ankyrin repeat region circular profile. 53 79 - -
Sebi251g00010 370 SUPERFAMILY Ankyrin repeat 23 100 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi251g00010 Sebi-Chr251 464402 468754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi251g00010 2 370 MAP Kinase Kinase Kinase AT1G14000 82.322 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Sebi251g00010 PK_Tyr_Ser-Thr 8.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi251g00010 - - gmx:100793237 681.404