Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi251g00004 ATGGGGAACAAGAGAAAAGGAAGGAGGAGGAGATGGAGGGAAAACAACAGTGAAGAAGGGAACATTGAATGGAAACAGATAAGGGAAGAGGCAGCATCAGTGGCTGCTGCTCTACTTGGTGCTAGAAGAGCAAGAAAACGTTACATTGGAGTGCGTCAAAGGCCTTCAGGGGAGGGTGTTGCTGAAATCAAAGACACCATACAGAACATTAGATTATGGTTAGGGCACTATGACACTGCTGAAGAGGCTGCAAGAGCTTATGATGAGGCTGCACGTTTACTTCGTGGTGCTAACACTCGCACAAATTTCTTTCCTTGTCAATCTTCTCATTTTACTCCAGCTCTTCCTCCAAAGATTGCCAAACTCTCCTTCTTAGGCTCAAAGCTAGAAACCTTGCTTCTTCTTGTATGGTCCCTGCTCCTTTTCCTAGTGACCACAATGAGCAAGAAACCAAGGCAGAACAAATCGAACCTCAATTTTTTGACCAAATAG 492 0.4472 MGNKRKGRRRRWRENNSEEGNIEWKQIREEAASVAAALLGARRARKRYIGVRQRPSGEGVAEIKDTIQNIRLWLGHYDTAEEAARAYDEAARLLRGANTRTNFFPCQSSHFTPALPPKIAKLSFLGSKLETLLLLVWSLLLFLVTTMSKKPRQNKSNLNFLTK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi251g00004 163 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 121 - -
Sebi251g00004 163 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Sebi251g00004 163 SUPERFAMILY DNA-binding domain 47 103 IPR016177 GO:0003677
Sebi251g00004 163 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Sebi251g00004 163 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Sebi251g00004 163 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Sebi251g00004 163 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Sebi251g00004 163 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Sebi251g00004 163 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Sebi251g00004 163 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi251g00004 Sebi-Chr251 352705 353196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi251g00004 45 108 AP2-EREBP Transcription Factor Family AT5G19790 70.149 6.05e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi251g00004 AP2 3.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi251g00004 K09286 - gmx:100793940 152.525