Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi250g00043 ATGAATTTCACAAGTCATACCAACTTGATAACTGTTCTGCTGATACTTTCCTGCTTTGGCCTATGCTTGAGTTCTGCCACTAATATGATCACTTCAGCCCAATTCATCAGGGACACTGACACACTAAGCTCAAACAACAGTGACTTCAAGTTAGGATTTTTCAGCCCTGAAAATTCAACAAATCGCTATGTGGGAATCTGGTATCTCTCTCAATCCAATGTTATATGGGTAGCTAACAGGAACCAGCCACTACCAAAAAACTCTTCTGGGATTGTTAAAATCTCTGAGGATGGCAATCTTGTGGTATTAAATAGCAAGAAGAATAAGGCATTTTGGTCAACAAATGTGGCACATATTGCAACAAATTCAACTGCCAAACTCTTAGATACTGGAAATCTGGTCCTACTAGATGGTGCCACAGGGGAAGTTATATGGGAGAGTTTCCAACATCCTTGTGATATTTATGTGCCAAAGATGAAACTAAGTATCAACAGAATTACAGAGTTTGGAATCATGGGGTTGAATCCACAGGGCCAACTAACAAGTGCATGGTGGAAAAACAGAAAGGAATTGTGGAGGACAGCATTCCAAGGAACTTCTTGTGATTTGTATGGCATGTGTGGGGCATTTGGAAGCTGTAATTGGCAGAACACACCAATATGTAGCTGTTTGAATGGCTATAAGCCTAGAAATCTAGAGGAGTGGAATAGGAGAAATTGGACTGGTGGGTGTGTAAGGAAGGAGGTGCTACAATGTGGGGGAGAAGGAGTGAGGAAAGATGGGTTTTTGAAACTTCAGAATATGAAAGTGCCAGACTTTGTAGAGAGGTTAGCAGCTTCTTTGGAGAGTGAATGCAGGGATCAGTGCTTGGAGAATTGTTCTTGTGTGGCATATGCATATGAGAGTGGTATTGGGTGCATGGTTTGGAGTGGAGATTTGATAGACATACAAAGATTCTCAAGTGGAGGAGGGGTTGATCTTTACATTCGTGTGGCACATTCTGTACTCGAAAAATATTCGGAAAAAAGAAGAGATAAGAGATTAATCATTGCAATTGGAGTGACCATAGGAATGATTACCTTAGCTGGTGGCTCTGCTTATCTCGCATGGAAATGGACCGCTAAATCTAGAGGAAAAATAAATTCACAAAGACAAAGAATGAACAAAGGCCAGACGCTGGATGATCAACTACCGCTTTTCAATTTTGAAGAGCTTGCAACTGCTACAAATAATTTTCACCCAGCTAACGTGCTTGGAAAAGGTGGTTTCGGTCCAGTATATAAGGGACAATTGAAAGACGGACAGGAAATAGCAGTGAAAAGGCTTTCAAAAACATCTGGACAAGGGTTAGAAGAATGCATGAATGAGATCTTAGTGATTTCAAAGCTTCAACATCGCAATCTTGTGAGAGTTCTTGGCTGCTGTATTGAACAGGAAGAAAGGATGTTGATCTATGAATACATGCCTAACAAGAGTTTGGATGCATTATTGTTTGATCCAGTCAAAAAGAAGGATCTAGATTGGCCAAAACGCTTCAATATAATTGAAGGAATCTCTCGAGATGGAGAGATGAATCCAAAAATATCTGACTTTGGTATGGCCAGAATCTTTGGAGGCCACGATTTACAAGCCAATACTAGAAGAGTTGTTGGAACATTTGGCTATATGCCTCCAGAATATGCATTCAGAGGGTTGTTTTCTGAGAAATCAGATGTCTTTAGCTTCGGAGTCTTGCTGCTAGAGATTATTAGTGGGAAAAAAATCAGTAGCTATTATGACCATGACCTATCATTAAGCCTCTTAGGATTTGCATGGAAATTATGGAATGAAAAGGATATCCAATCCCTGATAGACCAAGAAATATGCAATCCAGATTATATGAAAAACATTTTGAGATGCATACATATTGGACTTCTTTGTGTTCAAGAAGTTGCAAAAGAGAGGCCAACTGTGGCTACAGTAGTTTCAATGCTTAATAGTGAGATTGTCAATCTCCCTCTCCCATCATATCCTGCATTCATAGAAAGGCAAATTGTGTGGACTGGAGAATCATCTCAGCAGAACCATAAAACATACTCCATCAACAATGTTACTATCACAGACATGCAGGGTAGATAG 2118 0.3994 MNFTSHTNLITVLLILSCFGLCLSSATNMITSAQFIRDTDTLSSNNSDFKLGFFSPENSTNRYVGIWYLSQSNVIWVANRNQPLPKNSSGIVKISEDGNLVVLNSKKNKAFWSTNVAHIATNSTAKLLDTGNLVLLDGATGEVIWESFQHPCDIYVPKMKLSINRITEFGIMGLNPQGQLTSAWWKNRKELWRTAFQGTSCDLYGMCGAFGSCNWQNTPICSCLNGYKPRNLEEWNRRNWTGGCVRKEVLQCGGEGVRKDGFLKLQNMKVPDFVERLAASLESECRDQCLENCSCVAYAYESGIGCMVWSGDLIDIQRFSSGGGVDLYIRVAHSVLEKYSEKRRDKRLIIAIGVTIGMITLAGGSAYLAWKWTAKSRGKINSQRQRMNKGQTLDDQLPLFNFEELATATNNFHPANVLGKGGFGPVYKGQLKDGQEIAVKRLSKTSGQGLEECMNEILVISKLQHRNLVRVLGCCIEQEERMLIYEYMPNKSLDALLFDPVKKKDLDWPKRFNIIEGISRDGEMNPKISDFGMARIFGGHDLQANTRRVVGTFGYMPPEYAFRGLFSEKSDVFSFGVLLLEIISGKKISSYYDHDLSLSLLGFAWKLWNEKDIQSLIDQEICNPDYMKNILRCIHIGLLCVQEVAKERPTVATVVSMLNSEIVNLPLPSYPAFIERQIVWTGESSQQNHKTYSINNVTITDMQGR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi250g00043 705 SMART blect_4 33 151 IPR001480 -
Sebi250g00043 705 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 376 487 - -
Sebi250g00043 705 PIRSF SRK 166 520 IPR024171 GO:0004674
Sebi250g00043 705 PIRSF SRK 1 172 IPR024171 GO:0004674
Sebi250g00043 705 PIRSF SRK 521 705 IPR024171 GO:0004674
Sebi250g00043 705 ProSiteProfiles PAN/Apple domain profile. 252 332 IPR003609 -
Sebi250g00043 705 Pfam Protein tyrosine and serine/threonine kinase 416 512 IPR001245 GO:0004672|GO:0006468
Sebi250g00043 705 Pfam Protein tyrosine and serine/threonine kinase 526 658 IPR001245 GO:0004672|GO:0006468
Sebi250g00043 705 Gene3D Transferase(Phosphotransferase) domain 1 488 664 - -
Sebi250g00043 705 Pfam S-locus glycoprotein domain 166 230 IPR000858 GO:0048544
Sebi250g00043 705 CDD B_lectin 41 151 IPR001480 -
Sebi250g00043 705 SMART ntp_6 257 331 IPR003609 -
Sebi250g00043 705 ProSiteProfiles Protein kinase domain profile. 412 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi250g00043 705 Pfam D-mannose binding lectin 74 168 IPR001480 -
Sebi250g00043 705 CDD PAN_AP_plant 250 332 - -
Sebi250g00043 705 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 148 - -
Sebi250g00043 705 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 172 649 - -
Sebi250g00043 705 SUPERFAMILY Protein kinase-like (PK-like) 395 693 IPR011009 -
Sebi250g00043 705 Gene3D Phosphorylase Kinase; domain 1 373 487 - -
Sebi250g00043 705 Pfam PAN-like domain 257 316 IPR003609 -
Sebi250g00043 705 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Sebi250g00043 705 Gene3D - 22 149 IPR036426 -
Sebi250g00043 705 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 194 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi250g00043 Sebi-Chr250 914050 918100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi250g00043 400 705 Receptor kinase-like Gene Family AT4G11530 49.704 2.88e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi250g00043 PK_Tyr_Ser-Thr 3.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi250g00043 - - gmx:106794168 894.419