Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi250g00042 ATGCCAGCGGTTTACGGAGCTCGCTTGACCACCTTCGAAGACGCCGAGAAGGAGAGTGAATACGGTTATGTTCGTAAGGTGTCAGGACCAGTGGTGGTTGCTGATGGCATGGCTGGAGCTGCTATGTATGAACTAGTACGTGTTGGTCGTGATAACCTCATTGGTGAAATTATTCGTTTGGAAGGGGATTCTGCTACTATTCAAGTTTATGAGGAAACAGCTGGTTTAATGGTTAATGATCCTGTCTTAAGGACACACAAGCCTTTGTCTGTGGAGTTGGGGCCTGGAATATTGGGGAATATTTTTGATGGAATCCAG 318 0.4623 MPAVYGARLTTFEDAEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQ 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi250g00042 106 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Sebi250g00042 106 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 18 89 IPR036121 GO:0046034|GO:1902600
Sebi250g00042 106 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 9 106 IPR022878 GO:0046034|GO:0046961
Sebi250g00042 106 Gene3D - 20 89 IPR023366 -
Sebi250g00042 106 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Sebi250g00042 106 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi250g00042 Sebi-Chr250 909730 910467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi250g00042 1 106 Primary Pumps ATPases(2) AT1G78900 94.340 1.35e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi250g00042 K02145 - cave:132186441 205.297