Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi250g00022 ATGACAGAGCTGAAGCAACTGAAAAATATCTCATTGTTTAACAACCAGTTCTCTGGTGTCATACCTCAAAGCTTGGGACTTAATAGCAGTCTACTGCAATTAGACTTTACAAATAATAAGTTCACTGGCAACCTTCCACCAAATCTTTGTTTTGGCAAGAAGTTGAGCATACTGGTTATGGGCATCAATCAACTTCAAGGTAGCATACCTCCTGATGTTGGAAGGTGTACAACTCTTAGAAGGGTAATTCTTAAACAAAACAACTTTACTGGGCCTCTTCCTGAATTTGAAAGCAACCCCAATCTTACATTTATGGATATCAGCAACAACAAAATCAATGGATCCATTCCATCAGGATTTAAACAGCTTTCTGAACTACAACTTGGTGGCAATAGGTTTGGAGGCAGAATTCCTGGATCGATTGGAGCATTGCAGAATTTGATCTATGGGTTGAATCTAAGTTCTAATGGGCTGATAGGTGATCTTCCTGTAGAAATTGGAAACCTGAAAACTTTGCAAACACTGGATCTATCTCAGAACAATTTGACAGGAAGCATAGAAATTCTTGGTGAACTCCCTTCTTTAGTTGAAATCAATATTTCAAACAATTCTTTTCATGGTCCTGTACCAAAGATGCTAATGAAGTTGCTCAATTCTCCCTCATCATCATTTTCGGGGAATCCTGGGCTATGTATCAGTTGTTCACCATCTGATGGCTCTGGTTGCACTGAAAGCAGCTATCTAAAACCATGTGATAACAAATCAACTAATCACAAAGGTCTCAGTAAAGTTGCAATTGTGATGATAGCTCTTGGATCCTCAATACTTGTCATTTTGTTGTTGCTGGGATTAGCTTACTATTTTGTTTTTGGAAGAAAATCTAAGCAGGAAGTCCATATCTCTGCTAATGAGGGTTCTTCGCCCCTTCTTAACAAAGTCATGCAGGCTACAGAAAACCTAAATGATCAGTATATTATTGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGGTAGGTCCAGACAAAGCTTTTGCTGTAAAGAAGCTAGGATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGGTCAGAGAAATTCAAACCCTTGGAAAAATTAGGCATCGAAATCTGGTTAAATTGGAAGACTTTTGGTTGAGAAAAGATCATGGTCTAATTTTGTATAACTACATGCCAAATGGAAGCCTTCATGATGTTTTGCATGAAAAGAATCCACCACCATCCTTAGAATGGAGTGTTCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTCCCATAGTGCACCGCGACATCAAACCAAAAAATATACTTCTAGACTCTGATATGGAGCCTCACATAGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTACTTCAAATCCTTCCATATCTGTGCCGGGTACAATTGGTTACATAGCACCAGAGAATGCTTATGCAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGCAACAGATTCCTCATTTATGGAGGGTACTGACATAGTGGGTTGGGTTAGATCTGTATGGAGTGAAACAGGAGAAATTAATCAAATTGTTGATTCAAGCCTTGCAGGGGAATTTCTAGATACCCATATAATGGAAAAAGTTACCAAAGTGCTCATGGTGGCTTTAAGATGTACTGAGCAAGATCCACGCAAGAGACCCACAATGACAGATGTTGTCAAGCAATTATCAGATGCTAATCCACAAGCACGGACAAGAAGTAAGAAGGGCTAG 1833 0.3961 MTELKQLKNISLFNNQFSGVIPQSLGLNSSLLQLDFTNNKFTGNLPPNLCFGKKLSILVMGINQLQGSIPPDVGRCTTLRRVILKQNNFTGPLPEFESNPNLTFMDISNNKINGSIPSGFKQLSELQLGGNRFGGRIPGSIGALQNLIYGLNLSSNGLIGDLPVEIGNLKTLQTLDLSQNNLTGSIEILGELPSLVEINISNNSFHGPVPKMLMKLLNSPSSSFSGNPGLCISCSPSDGSGCTESSYLKPCDNKSTNHKGLSKVAIVMIALGSSILVILLLLGLAYYFVFGRKSKQEVHISANEGSSPLLNKVMQATENLNDQYIIGRGAHGVVYKALVGPDKAFAVKKLGFAASKGKNLSMVREIQTLGKIRHRNLVKLEDFWLRKDHGLILYNYMPNGSLHDVLHEKNPPPSLEWSVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPKNILLDSDMEPHIADFGIAKLLDQSSTSNPSISVPGTIGYIAPENAYATANSRESDVYSYGVVLLELITRKKATDSSFMEGTDIVGWVRSVWSETGEINQIVDSSLAGEFLDTHIMEKVTKVLMVALRCTEQDPRKRPTMTDVVKQLSDANPQARTRSKKG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi250g00022 610 SUPERFAMILY L domain-like 3 231 - -
Sebi250g00022 610 SMART serkin_6 320 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi250g00022 610 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 597 - -
Sebi250g00022 610 MobiDBLite consensus disorder prediction 583 610 - -
Sebi250g00022 610 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 93 - -
Sebi250g00022 610 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Sebi250g00022 610 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Sebi250g00022 610 Gene3D Ribonuclease Inhibitor 1 239 IPR032675 -
Sebi250g00022 610 PRINTS Leucine-rich repeat signature 102 115 - -
Sebi250g00022 610 PRINTS Leucine-rich repeat signature 169 182 - -
Sebi250g00022 610 Pfam Leucine Rich repeats (2 copies) 171 203 IPR025875 -
Sebi250g00022 610 Pfam Protein kinase domain 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi250g00022 610 FunFam Serine/threonine-protein kinase-like protein CCR4 397 610 - -
Sebi250g00022 610 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 286 396 - -
Sebi250g00022 610 ProSiteProfiles Protein kinase domain profile. 320 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi250g00022 610 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 186 - -
Sebi250g00022 610 Gene3D Transferase(Phosphotransferase) domain 1 397 609 - -
Sebi250g00022 610 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Sebi250g00022 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Sebi250g00022 610 Gene3D Phosphorylase Kinase; domain 1 290 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi250g00022 Sebi-Chr250 487425 489646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi250g00022 1 607 Receptor kinase-like Gene Family AT1G73080 50.319 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi250g00022 Pkinase 7.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi250g00022 - - gmx:100778035 811.216