Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi250g00005 ATGATGAATGGTTCCCAAAAATCCTCAACTCCATACACCTCTCTGTATTCCAATCCCCTCAATAACGTCAACGAGCTCAGGCACTGTCGTAGTTGCAGCACCGATTATGGCCACTTACGCTTAGCCTCCACCAAAGGTGACACCTTTCACTTTGAAGATTTCAGGAATGATCATGACAACAAAGAAAACGCAAATGGGTCATCTTCTTCTCTGCCTAAACCCTTCTCAAAGTCCAAGTCTTTGTCCACAGACAGGGTTCTTAAGCCCACCTCACTCCAGTTCTGCATGCAAATGAATGACCCTCTTGATTCTCAACGTTCCTCCTCTTTGAATATTTGGGACTACTCTGACTCTGATGCTGCTCCTGCTTCCTCCTGGTCCACTTTGCCCAATAAGTCTTTGATCTGTAGACCCTTACCTATTGATATTGGAAGGTGTACTTGTGTTATTGTGAAGGAAGCAATGCCACAGGGACTATCTGGGGACAGTTTGTTCTCTCTTTACACCTACGAAGGTCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCAACACAAGCGGCGGAATGGGAGGTCTCAATTCATTGTAGCTCAGAATGTCAAAGGACTACTGTCCAATTCAGATGATAGTTTCCTTGGGACCGTAACAGCTAACCTCATGGGCTCAAAATACCACATTTGGGATCAGGGATATCGTCATAATTCTCATAGTAAACAACCAAAGCCACCTCTTGCTATTGTGAAGTATATACCTACAGTAGCAACATGTACAGGAAGTCACAGAAGCATCAAGGCATACATACCCAAGCATCAATCTATGTCACTCAAGAACACAGCCCAGGTACAACATATTAAAGGACTGCCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTATACTCAAGGATTCCACTGTACAACAAGATTTCAAAGCAATTTGAGCTTGACTACAGAGATAAAGGAAGGACAGGACTTAGAGTCCAAAGATCAGTGAAAAATTTTCAACTGACTTTAGAGCATATTTCTCAATTGAGTAATGTTTGTACCTTAAGAGAATGGGAAGCAGACCATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTTGTTATGGATTACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGCTGCACCGTATAGTGGGAAATCTCTGTTACCACACTCACTTGGTTCAACCTCTGAACTGAAGATGGCTTTTAGTTTCATGGATTGTGTGGTTGAGACTTGA 1275 0.4322 MMNGSQKSSTPYTSLYSNPLNNVNELRHCRSCSTDYGHLRLASTKGDTFHFEDFRNDHDNKENANGSSSSLPKPFSKSKSLSTDRVLKPTSLQFCMQMNDPLDSQRSSSLNIWDYSDSDAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEAMPQGLSGDSLFSLYTYEGQGRQNRKLAVAQHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGYRHNSHSKQPKPPLAIVKYIPTVATCTGSHRSIKAYIPKHQSMSLKNTAQVQHIKGLPMNWEGKLDKVHQLYSRIPLYNKISKQFELDYRDKGRTGLRVQRSVKNFQLTLEHISQLSNVCTLREWEADHPAAREGGKIKICYGLQVTRRFAYVWLPLMQSFAAPYSGKSLLPHSLGSTSELKMAFSFMDCVVET 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi250g00005 424 MobiDBLite consensus disorder prediction 53 84 - -
Sebi250g00005 424 Gene3D Tubby Protein; Chain A 131 367 IPR025659 -
Sebi250g00005 424 MobiDBLite consensus disorder prediction 63 84 - -
Sebi250g00005 424 SUPERFAMILY Tubby C-terminal domain-like 123 341 IPR025659 -
Sebi250g00005 424 PANTHER TUBBY-RELATED 78 339 - -
Sebi250g00005 424 Pfam Tub family 137 341 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi250g00005 Sebi-Chr250 134651 137770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi250g00005 51 281 TUB Transcription Factor Family AT1G16070 51.220 6.78e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi250g00005 Tub 6.7e-21 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi250g00005 K19600 - qsa:O6P43_017913 418.313