Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi24g00100 ATGCAACAATCAAACGGTTCTGATTCATCGCAACAGCAACAGCAACACTCGTCGGAGCAGAACAAACAACAACGCCAACCGCCGCCGCCGCAGGCTCAGCCAGTGGCGGTGCCGCCTCAGTGGGTGCCGATGCAGTATCCGGCGGCGGCGATGGTAATGCCGCACCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCTTACGTGCCTTACCACCACCAGTATCAGCAGCTACCACCGCACGTGCCACATCAGCATCAGCATCAACACCAGCATGGATCCAACGGCGAGAACAAGACTATTTGGGTCGGTGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTTATTCACATGCCACAGCTGAGAAAGTTTTGCAGAATTATCCTGGAATGGTGATGCCCAACACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACGGGAGACAAGAATTCAGATAATGCTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGTTTGTTGCATGAAACTTTTGCTAGTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGATATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGATCCCAGGCCATGACTCATATGAATGGTGTTTACTGTTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGAGGCCAGTCAAATGGCGCATCCGGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTCACAGATGAAGATCTTAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCCGTAGGTAAGGGGTGTGGTTTTGTCCAATTTGCAAACAG 1025 0.48 MQQSNGSDSSQQQQQHSSEQNKQQRQPPPPQAQPVAVPPQWVPMQYPAAAMVMPHHMLPPQHYAPPPYVPYHHQYQQLPPHVPHQHQHQHQHGSNGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYPGMVMPNTEQPFRLNWATFSTGDKNSDNAPDLSIFVGDLAADVTDSLLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTHMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGASGQSEADSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi24g00100 341 MobiDBLite consensus disorder prediction 1 37 - -
Sebi24g00100 341 FunFam Polyadenylate-binding protein RBP47C isoform A 191 267 - -
Sebi24g00100 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 341 IPR000504 GO:0003723
Sebi24g00100 341 SMART rrm1_1 100 175 IPR000504 GO:0003723
Sebi24g00100 341 SMART rrm1_1 193 267 IPR000504 GO:0003723
Sebi24g00100 341 SMART rrm1_1 298 341 IPR000504 GO:0003723
Sebi24g00100 341 CDD RRM2_SECp43_like 191 270 - -
Sebi24g00100 341 CDD RRM1_SECp43_like 100 180 - -
Sebi24g00100 341 SUPERFAMILY RNA-binding domain, RBD 63 180 IPR035979 GO:0003676
Sebi24g00100 341 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 88 341 - -
Sebi24g00100 341 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Sebi24g00100 341 SUPERFAMILY RNA-binding domain, RBD 191 341 IPR035979 GO:0003676
Sebi24g00100 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Sebi24g00100 341 MobiDBLite consensus disorder prediction 1 26 - -
Sebi24g00100 341 MobiDBLite consensus disorder prediction 272 303 - -
Sebi24g00100 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 263 IPR000504 GO:0003723
Sebi24g00100 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 341 IPR000504 GO:0003723
Sebi24g00100 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Sebi24g00100 341 Gene3D - 98 178 IPR012677 -
Sebi24g00100 341 Gene3D - 191 267 IPR012677 -
Sebi24g00100 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Sebi24g00100 341 MobiDBLite consensus disorder prediction 267 303 - -
Sebi24g00100 341 Gene3D - 268 341 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi24g00100 Sebi-Chr24 3027477 3030471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi24g00100 98 341 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 3.89e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi24g00100 - - gmx:100819523 501.516