Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi24g00052 ATGGCTCTGGTTCCAGTAGGGTTTCATAAAATCAACAATGTCTGTGAACGTAGAGAGAATTGGCGCTTAATTGTTAAGCTTGTGAGGGTGTGGAATATGTGCTCCATAGCCACCCCAAACTACCCATATGCCACAGAGATGGTTTTCGTCGATGAAGAGGGTTCAACCATTGAGGCAACAATCCAGAAACATCTTATGAACAAGTTCGCGAATGCAGTGGTGGAGGGAGAGGTGTACAAGCTGACCAACTTCGGAGTGACGACCAACTCAGGCAAATTTAGAGTTGCTGGTCATGATTTCAAGCTTGTGTTTGATGCCAGCACAAAGATGGTTCCGTGCCCATCCGCACCTATTCCTTCCCTGGGATTGTCATTGCTGAAGACTTCTGATATAGCAAAGACCAATGGACGGTCGGAGTACCTGCTAGACTTCATGGGAATTCTAACAGCGGTGTCTGAGGAGATGATCCTCAGCAAGGAACGTCACCAAACACGAATGATGTTGCTAGACTTGGTGGATGAAATGGGTGAGGTACGATGTGCGCTGTTTGGAGATTTGATAGATGTCGTTAATGGACACCTAGCAGTTACAAGCATAGGTCTCCCCGTAGTTGTTATACAGCTGGCGAGGGTTAACTTCTACAAGGATAGGAGTCACCCTATTTCTATTCGTGATGAGTTTCTAGAACTGTACCCTCGGAAAACTCTTGGACAGCTTGTGGATATCCTAGAGGAGGGATTCTTCATTGTCTTATGCACTGTTTCAGAGATTGTGCAGGAGACCTCTTGGTGGTACATGGCACGTCCATGCATGAAAGTTGTTTCTTTCGCAACAGGCGTGCCTTACTGTAAAGATTGTCATAGTATTGTCATTGATATGACCCCGAGGTACACGCTGAAGGTTTTTGTCTCTGACGGGGCAGACAGTGCTCAGCTTATAATGTTTGATTCAGAATGCTTCACTATACTCAATAAACCTTGCAAGGAATTGGTTGCTGACACCAAGGACTTGCCGTGTGGTGAATACCCTGAGGAGATTACAAAGTTGGTTGGAAAGGAATTTATGTTTCGACTTGAGAAGAAGGAGGACACCGTGTTTAGCTTGGATGAATCCTATCGTTGTAGAAGAGTGTGCTCTAACAGCTCCAAAATTGCAGAATTCAAAGAAGAAGTGGATGAGGACACACCTTTAAAGCTCAAATTTGCCCTTGCGTTTAGCAAGATACCCCAGATTGAAGGAGATACCTCTGCTAGCAATGAAACCCCACACTCTACTTCTATTGTCACTGTCCTGGATGTTTCTCCTAATTCATGTGGACCAGCTTCATCCTTAGCTGAGCTTCCTGGACATGGCTTGAAAAGAGAGCTTGAACGGTCTGTTGAAGGTCCTGCAGAATGA 1398 0.4528 MALVPVGFHKINNVCERRENWRLIVKLVRVWNMCSIATPNYPYATEMVFVDEEGSTIEATIQKHLMNKFANAVVEGEVYKLTNFGVTTNSGKFRVAGHDFKLVFDASTKMVPCPSAPIPSLGLSLLKTSDIAKTNGRSEYLLDFMGILTAVSEEMILSKERHQTRMMLLDLVDEMGEVRCALFGDLIDVVNGHLAVTSIGLPVVVIQLARVNFYKDRSHPISIRDEFLELYPRKTLGQLVDILEEGFFIVLCTVSEIVQETSWWYMARPCMKVVSFATGVPYCKDCHSIVIDMTPRYTLKVFVSDGADSAQLIMFDSECFTILNKPCKELVADTKDLPCGEYPEEITKLVGKEFMFRLEKKEDTVFSLDESYRCRRVCSNSSKIAEFKEEVDEDTPLKLKFALAFSKIPQIEGDTSASNETPHSTSIVTVLDVSPNSCGPASSLAELPGHGLKRELERSVEGPAE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi24g00052 465 Gene3D - 231 392 IPR012340 -
Sebi24g00052 465 CDD RPA1_DBD_C 247 364 IPR047192 -
Sebi24g00052 465 Gene3D - 117 230 IPR012340 -
Sebi24g00052 465 SUPERFAMILY Nucleic acid-binding proteins 231 380 IPR012340 -
Sebi24g00052 465 Pfam Replication factor-A C terminal domain 247 366 IPR013955 -
Sebi24g00052 465 SUPERFAMILY Nucleic acid-binding proteins 124 224 IPR012340 -
Sebi24g00052 465 Pfam Domain of unknown function DUF223 46 114 IPR003871 -
Sebi24g00052 465 MobiDBLite consensus disorder prediction 441 465 - -
Sebi24g00052 465 MobiDBLite consensus disorder prediction 450 465 - -
Sebi24g00052 465 CDD RPA1_DBD_A_like 22 110 - -
Sebi24g00052 465 Gene3D - 7 115 IPR012340 -
Sebi24g00052 465 SUPERFAMILY Nucleic acid-binding proteins 6 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi24g00052 Sebi-Chr24 1916260 1918756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi24g00052 49 332 Core DNA Replication Machinery Family AT2G06510 21.829 2.09e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi24g00052 - - lja:Lj6g3v0884310.1 300.827