Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi24g00049 ATGGACGGTTACGATGGGACCGTGAGGCTTGGTGCTATTAACTTGAAGCATGATCGCGGTGATTTTGACTCCGGTCCCGATGTATCGGTTTCCTCTCCGGTTACCAGACAGAAAGCCGCTGCTGCTAAGCAATTCATCGAGAATCATTACAAGAATTATCTTCAAGGATTGCAGGATCGCAAAGACAGACGCCGAGCACTTCAAAGGAAAGTGCAGGAATCTCAAATACCAGCTGAAGAGCAAGAGGAGATGATGAGGAATTTGGAGCGCCGAGAAACTGAATACATGAGGCTTCAGAGACGTAAAATTGGAATTGACGATTTCGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTGGAACATGTAAGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATCATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAACACAACTATGTACATAGGGATATAAAACCAGATAACCTGATTCTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCAACAATTCTATTGGAAAATGAAGATTTTAGCGGTCAAGAATCAACTAGTGAAACTGAAGGATATTCTACCTCCCCTTGGTTGATGCCAAAGGAACTATTACAACAGTGGAAACGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGACCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCTGAAGAACCCAAAATATCAGTTGAAGCTAAGGATCTGATCTGTCGCTTACTATGTGATGTTGACTCAAGACTAGGAACCAGAGGAGTAGAAGAAATAAAGGCCCATCCATGGTTCAAGAGTATTCAGTGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTACAGTCACTGGAGACTTGGACACGCAAAACTTTGAGAAGTTTCCTGATGTGGACGGCCCACCATCCTCAACAGCAAGTGTGGGACCTTGGCGAAAGATGTTGACATCCAAAGACACTAATTTCATAGGATATACTTTTACGAAGTCAGACATCCTTAAATCGCTTGACAGTTCAGGTGCAGATATCAAAGTAAACGGATCGTCAAAAACCCCTTCCTTGATTTCCTTGTTAGGTCGGATTGATTTGCAAGATACTGTCATTTCAGAAAGGGTAAGGCCATGGATCACGGTGGAGCTAATACCACGCACGCAGCTCAGTTCTACTGCTTTCTGCGCTCTCAAACGATGA 1623 0.4214 MDGYDGTVRLGAINLKHDRGDFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPAEEQEEMMRNLERRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDFSGQESTSETEGYSTSPWLMPKELLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMTCRKIVNWKTCLKFPEEPKISVEAKDLICRLLCDVDSRLGTRGVEEIKAHPWFKSIQWDMLYELEAAYKPTVTGDLDTQNFEKFPDVDGPPSSTASVGPWRKMLTSKDTNFIGYTFTKSDILKSLDSSGADIKVNGSSKTPSLISLLGRIDLQDTVISERVRPWITVELIPRTQLSSTAFCALKR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi24g00049 540 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Sebi24g00049 540 CDD MobB_NDR_LATS-like 42 103 - -
Sebi24g00049 540 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Sebi24g00049 540 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Sebi24g00049 540 CDD STKc_NDR_like 106 471 - -
Sebi24g00049 540 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Sebi24g00049 540 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi24g00049 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Sebi24g00049 540 Coils Coil 78 101 - -
Sebi24g00049 540 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi24g00049 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 447 - -
Sebi24g00049 540 Gene3D Phosphorylase Kinase; domain 1 106 437 - -
Sebi24g00049 540 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi24g00049 540 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi24g00049 540 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi24g00049 540 SUPERFAMILY Protein kinase-like (PK-like) 83 459 IPR011009 -
Sebi24g00049 540 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Sebi24g00049 540 Gene3D Transferase(Phosphotransferase) domain 1 192 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi24g00049 Sebi-Chr24 1853049 1860583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi24g00049 1 509 AGC Kinase Gene Family AT5G09890 79.492 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Sebi24g00049 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi24g00049 K08790 - gmx:100814085 974.156