Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi24g00046 ATGGACACTATGGACGGGTTTAACCCATCCCTTTCGTTGGATGATGAAATCGACACGATGTTAATGAGGATGCAGAATCTCCCTGAATTCTCTGCACCTCACGGAAACGGCACGGTGGCGAGTTTTCAACAACCAGAGTTCTCTGTTGCAAACACCATGCCATTTGCAAATTCAATTGAGAACCTTCATACTCCTATTCCTTGGTCTTCATTCACTCACACGCCTGCATCAACCTCAATCTCTTTCGCTAATAACACTGCTATGATGAATTCATCCAACGGTGATGCATTATCTGGTGCAAACGGTTATTCAGGGAAACGCAATTCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCATCCATGCAACCGATTCACATAGATTATGAATCCGTGAAGGCACCGAAGCGGAGGAACGTGAAGATTTCGAAGGATCCTCAGAGCGTTGCAGCTAGGCACAGGAGAGAAAGGATCAGTGAGAGGATAAGGATACTGCAGAGAATGGTCCCTGGAGGGACTAAGATGGACACTGCTTCTATGTTAGATGAAGCCATTCACTACCTAAAGTTTCTCAAGACACAGGTTCAATCACTTGAACGAGTTGCTGCTGCTAATAACAGGATTGGATTCCCTGTGTCTGTGTCTAATGAAAGTGCTAGCACTAGCACCACCAGCACCCCTTATCTTCCACTTCCAAAACCTTAA 708 0.4576 MDTMDGFNPSLSLDDEIDTMLMRMQNLPEFSAPHGNGTVASFQQPEFSVANTMPFANSIENLHTPIPWSSFTHTPASTSISFANNTAMMNSSNGDALSGANGYSGKRNSMAAMREMIFRIASMQPIHIDYESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRMVPGGTKMDTASMLDEAIHYLKFLKTQVQSLERVAAANNRIGFPVSVSNESASTSTTSTPYLPLPKP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi24g00046 235 MobiDBLite consensus disorder prediction 214 229 - -
Sebi24g00046 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 204 IPR036638 GO:0046983
Sebi24g00046 235 MobiDBLite consensus disorder prediction 214 235 - -
Sebi24g00046 235 SMART finulus 149 198 IPR011598 GO:0046983
Sebi24g00046 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Sebi24g00046 235 Gene3D - 137 209 IPR036638 GO:0046983
Sebi24g00046 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 51 220 IPR045843 GO:0003700|GO:0006355
Sebi24g00046 235 FunFam BHLH transcription factor 146 210 - -
Sebi24g00046 235 Pfam Helix-loop-helix DNA-binding domain 152 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi24g00046 Sebi-Chr24 1747055 1747762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi24g00046 14 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.155 2.46e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi24g00046 HLH 6.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi24g00046 - - gmx:100815041 228.409