Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi24g00040 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGTCTGAAACCTTAGAATTTGATTGTGGATCTACATCGAGTGCTGCTACAGTTGATCAGCATATTTTATGGAATAACATGCAGAATCCTACAGAAAATCGAATACCTGACTATATACTTTCCCCCAGTGATATGAACCCATCTTATGTGAATTCTATGAACCATGAATGGCATAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCTGGTAATACACAGAATGGGGGTAACAACAATGAGCAGAAAAGGGAGCTGGGATTATCATCTTCAATAAATGCTGCTGCTGTAGCTGGTCCAAGACTAGAAGAAAGGCGCTTTGAACCAACCAATGCCTTTTCATTGGACAATGTGAATTCAAGTCCTATGTATGTGTGCAGCTCTAATTCTCATTTGGTGCCACAGAATCTCAACTTAAATGCTGGTTTAGCAGATAATGCTAGTGGGGATAATAGCTATCCGGTAGAACATCCTAACTTGCACAAGTCTAATGGACCAGTGAATGAGCATATTCCACCTAATATTGGTTCTGGGTCTTTTCTGCTTCCTTCTGGAAGTAACAGCATTTTTGTGGAGAATACTGATGGCATGCCAGGTTGTTCTCTAGACACCCGTCGTGTATCTTGTAAAAGAAAGGCAGTTGAACGAAATGTTGGACAATCTTCAGACAGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGCAGTGCTTGGAACACTCTTCCTACTCAGGATTATGCAGGGAGCAGTTTTAACAGACAGGTAAATGCAAGAGCAAGACTTGGCCTGAGTATGGGTGGTGTTGCCTCTGAAAGGGTTCCTGAGTCAAATGTTGCTGGAAGTTCAGAAAGCTTCCACAGAAATTTTCGTCTGAGAACAAATCCTTCAAGCCAACAAATTTCTGTTCCTCCCGCCACATTCTCAAATGGGAGTATGATCAGGAATTCTGTTGTTTCTTCATCCTCTCCAATATTGCAAAGGTTTAATCCTGTTGATAATTCTCTGGACTTGAGGTCAGTACCACCATCAGTAGATGCCAATGCCATGATTCCTCAAAGCCAGCCCCTTCTAATTCATGTTCCTGCTTTACCAAGGAATCTGCAGTCATTCAGGTGGAGTGGTGGTTCTAGCTCAACAAACAACCATGCATCAAACTCAGTTATATGTGCAAATAGGGATAATCACTCACCTGAGGAAGCAAGCTCAAGAAATACGCCTAGAAACATTTTAGAACACCCAGTGTTTGTACCTGCAACCAATTTAAGAAATGCTGTTCGAAATCCAACTAGAGCGTCAAGTAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCGCGGACTGGGTCAAATTCAGCTATCAATCCATCATCTGCCTCAGCGTGGGTTTCTCGTCCTAATCCTCAGCAGTATCCACGTAGGTTATCTGATTATGTTCGTAGGTCCTTGTTTTCTCCGGGTTCTGAAGCTGTAGGAAGTCCAAGCAATAATTATTCTTCCTTGCGTGGTCCTTCTACTTCATCTGAATCAAGGGGGCTTTCATCTGGGGTAAACCCAGGATCATCTTCATGGTTGGAGAGGTCAGCTGATAGTGAATTTGGAATCCCCTATTCATTACGATCTTTGGCTGTTGCTGGTGAAGGAAGCAGTAGACTTGTATCTGAGCTACGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGAGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCTCTGGAATTGCGGATATTCATGACCGACACAGGGATATGCGAATTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGCATTGGAAATGTGAATACAGGATTGAGTGAGGAGAACATATTGAAACATTTGAAGCAGAAGAAGTATTCAGTTGAATCAGGATCTCAGCGTGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAATGATGGAGATGATATTGGATCATTGGATTGTGGACATGATTACCATACCGACTGTATTAAACAGTGGCTAGTGCATAAGAATCTGTGTCCCATTTGTAAAAGAACAGGGTTGGCAACATGA 2121 0.4272 MQGQRGTIGSLSETLEFDCGSTSSAATVDQHILWNNMQNPTENRIPDYILSPSDMNPSYVNSMNHEWHNLSGWSLGEPSSGNTQNGGNNNEQKRELGLSSSINAAAVAGPRLEERRFEPTNAFSLDNVNSSPMYVCSSNSHLVPQNLNLNAGLADNASGDNSYPVEHPNLHKSNGPVNEHIPPNIGSGSFLLPSGSNSIFVENTDGMPGCSLDTRRVSCKRKAVERNVGQSSDSGSSSYSQHTDGSAWNTLPTQDYAGSSFNRQVNARARLGLSMGGVASERVPESNVAGSSESFHRNFRLRTNPSSQQISVPPATFSNGSMIRNSVVSSSSPILQRFNPVDNSLDLRSVPPSVDANAMIPQSQPLLIHVPALPRNLQSFRWSGGSSSTNNHASNSVICANRDNHSPEEASSRNTPRNILEHPVFVPATNLRNAVRNPTRASSSANLSIPGNVASSSRTGSNSAINPSSASAWVSRPNPQQYPRRLSDYVRRSLFSPGSEAVGSPSNNYSSLRGPSTSSESRGLSSGVNPGSSSWLERSADSEFGIPYSLRSLAVAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFSGIADIHDRHRDMRIDVDNMSYEELLALEERIGNVNTGLSEENILKHLKQKKYSVESGSQREAEPCCVCQEEYNDGDDIGSLDCGHDYHTDCIKQWLVHKNLCPICKRTGLAT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi24g00040 706 MobiDBLite consensus disorder prediction 499 532 - -
Sebi24g00040 706 MobiDBLite consensus disorder prediction 383 402 - -
Sebi24g00040 706 SMART ring_2 659 699 IPR001841 -
Sebi24g00040 706 MobiDBLite consensus disorder prediction 497 532 - -
Sebi24g00040 706 MobiDBLite consensus disorder prediction 228 246 - -
Sebi24g00040 706 Pfam Ring finger domain 659 700 IPR001841 -
Sebi24g00040 706 MobiDBLite consensus disorder prediction 74 93 - -
Sebi24g00040 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Sebi24g00040 706 MobiDBLite consensus disorder prediction 223 246 - -
Sebi24g00040 706 FunFam E3 ubiquitin-protein ligase MBR2 627 704 - -
Sebi24g00040 706 SUPERFAMILY RING/U-box 648 702 - -
Sebi24g00040 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 215 704 IPR045191 GO:0061630
Sebi24g00040 706 MobiDBLite consensus disorder prediction 383 425 - -
Sebi24g00040 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Sebi24g00040 706 MobiDBLite consensus disorder prediction 437 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi24g00040 Sebi-Chr24 1555533 1560055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi24g00040 1 706 C3H Transcription Factor Family AT2G15530 31.890 2.88e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi24g00040 - - lja:Lj0g3v0173889.1 1029.62