Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi24g00035 ATGATACTTTTTCTTCTTTTGGAAATATTCTTTCTTGCAAAATCAACTGATGGCTCTGGCCAGTCTAAAGGCTATGGTTTTGTTCAATTCGACAATGAGGAATCTGCACAGAATGCGATTGACAAGTTGAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGACGAAGACTTAAAGAAAACTTTTGGAGAATATGGTACCATTACTAGTGCTGTTGTAATGAGAGATGCAGATGCCCAGAAAAAATCTGAACGAGAGCATGAACTGAAAGGACGATTTGAGCAGAGTATAAAGGAAGCTGTTGACAAATATCAAGGCGTGAACTTGTATCTCAAGAACTTGGATGATTCCTTTTCTGATGAAAAACTTAAAGAACTGTTCTTAGAGTTTGAAATTCGGCAATACATTTATTTTCACCTATTCTACAGATTATGCGAGACCCAAGCGGAATCAGTAGGATCAGGGTTTGTTGCATTTTCAACTCCCGAGGAAGCATTACGAGCTGTGACTTGGGAGATGAATGGTAGAATGATTGCTGGCAAGCCTCTGTATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGGGCAAGGTTACAGGTGCTAAGGGGAAGTGAGGGATGTGGTCAATTTGTGCCTCTTGTTTCTGATACACTGCCCCATTATGAGGCACATTCCTCGCATGCCTCGAGGCTGTGA 699 0.4134 MILFLLLEIFFLAKSTDGSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVDEDLKKTFGEYGTITSAVVMRDADAQKKSEREHELKGRFEQSIKEAVDKYQGVNLYLKNLDDSFSDEKLKELFLEFEIRQYIYFHLFYRLCETQAESVGSGFVAFSTPEEALRAVTWEMNGRMIAGKPLYVALAQRKEERRARLQVLRGSEGCGQFVPLVSDTLPHYEAHSSHASRL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi24g00035 232 SUPERFAMILY RNA-binding domain, RBD 103 208 IPR035979 GO:0003676
Sebi24g00035 232 Gene3D - 84 200 IPR012677 -
Sebi24g00035 232 PANTHER RNA BINDING PROTEIN 17 206 - -
Sebi24g00035 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 53 IPR000504 GO:0003723
Sebi24g00035 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 184 IPR000504 GO:0003723
Sebi24g00035 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 60 IPR000504 GO:0003723
Sebi24g00035 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 191 IPR000504 GO:0003723
Sebi24g00035 232 SUPERFAMILY RNA-binding domain, RBD 17 77 IPR035979 GO:0003676
Sebi24g00035 232 Gene3D - 11 58 IPR012677 -
Sebi24g00035 232 SMART rrm1_1 2 56 IPR000504 GO:0003723
Sebi24g00035 232 SMART rrm1_1 109 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi24g00035 Sebi-Chr24 1461113 1462461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi24g00035 15 201 Eukaryotic Initiation Factors Gene Family AT1G49760 47.656 2.63e-63 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi24g00035 K13126 - pvy:116125579 177.178