Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00108 ATGTCGCGCAAAGTGAATTTTGTTGGAGAAATTGATCGAACCAAAGAATCATGGAAGTTGGCTGTTAGAGTGACCAATGTTTGGCGTTCAGAAAATTACATGGATGTGATTTTCATGGATGAGAAGGGAGGAAAAATACATGCATCATTGAATGAATCAGATTTGCGGAAATTAAATGTTGTCATAGAAGAGCGTAACACTTACAGTATTAAAAACTTGGAAGTCAAAGAGAATACTGGTAAGTATAAGTTATGCAACCACCTATACAAGGTTGGATTCATGAAAGGAACCAATGTTCGACAAGTTGATTTCCCGCAAATTCCTCTAAATGTGTTCCAATTTACAAGCTTTGAGGATATAATCAAAGGAAATGCTTCCACTGATGTGTTAATAGATGTAATTGGAGAGTTCATTGACATTCAACAACATATCGATGAAAGCATACCCAGGAAATTGGTTGTGGTCATGAAGGATCAAAGTGGCCACACTATAAGCTGGACTTTGTGGGAGGAGTATGAAAGCCAGGTTTTCTCTTTTCTAGGAACACATGAAGGTGGCCCAATCATCATGCTACTTAGTCTTGCCCTAATAAAAGAAGCTAAGGTCTTGGCACTAAATAAGAGCGTTATCATGTCATTAGGAAACTTCCCAGTTACTGTTCAAAATACAAAGGTTCACTCAAGGCTATACATCAATGAAGACATTGATGAGATCAATAAATTCAAAAGCAGCTTGGACTCAACTCATGTGTATGAGTCATACAGTCAAAAACTGAGTCAGTTGTCTTCGTCAAGTCATGTTACCCAAGGAGAAACATTTATTCAAGATGCAAATGTCATGAGTTTAGCTAAAATCAATGAGACCCAAGAGGAAATATTTTGCCTCACTGTTGGGAAAATAGAGATGATATATGTTAGCAATGGTTGGCAATATGATGCATGTGTTAAGTGTAGCAAGAAACTGGAGTCTGAAACTGAGCCATTTATATGTGCAAGGTGTGGAAAGCTAAACTCTGAACGAGTTCCTAGGTTCAGGTTAGAGGTAAAAGTTTCTGACAAGAATGCGCATTCAAAGTTCATTCTATGGGATAAGCATTGTGTCCAACTGTTGAACCAGAGTGCTCTGGATCTTAAGAAGCAAATGATCCAGGAGGAAGGAGTCTTTGATCCAATGGAACTCCCTGGACCCATAGATTCTATTCTAGGCAAGGTTCTTGCTTTCAAGATTAAGATCCAACTAAAGTACAAAGGTTATTCAGTTCACCAAATCTCTGAAGATCCACAAATTATTGAATCAATCATTGGGTCAATTAAAAAGAATGAGGGTGCTGGGAAGATTGAGAAAGGAAAACTTGTCTGCTCAGGTGTTAATGAAGTTGATTACATGGACAGTGTTGATGGTGTGATATAA 1410 0.3794 MSRKVNFVGEIDRTKESWKLAVRVTNVWRSENYMDVIFMDEKGGKIHASLNESDLRKLNVVIEERNTYSIKNLEVKENTGKYKLCNHLYKVGFMKGTNVRQVDFPQIPLNVFQFTSFEDIIKGNASTDVLIDVIGEFIDIQQHIDESIPRKLVVVMKDQSGHTISWTLWEEYESQVFSFLGTHEGGPIIMLLSLALIKEAKVLALNKSVIMSLGNFPVTVQNTKVHSRLYINEDIDEINKFKSSLDSTHVYESYSQKLSQLSSSSHVTQGETFIQDANVMSLAKINETQEEIFCLTVGKIEMIYVSNGWQYDACVKCSKKLESETEPFICARCGKLNSERVPRFRLEVKVSDKNAHSKFILWDKHCVQLLNQSALDLKKQMIQEEGVFDPMELPGPIDSILGKVLAFKIKIQLKYKGYSVHQISEDPQIIESIIGSIKKNEGAGKIEKGKLVCSGVNEVDYMDSVDGVI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00108 469 SUPERFAMILY Nucleic acid-binding proteins 284 421 IPR012340 -
Sebi249g00108 469 Gene3D - 262 434 IPR012340 -
Sebi249g00108 469 PANTHER OS03G0429900 PROTEIN 8 413 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi249g00108 469 Pfam Domain of unknown function DUF223 36 130 IPR003871 -
Sebi249g00108 469 SUPERFAMILY Nucleic acid-binding proteins 112 250 IPR012340 -
Sebi249g00108 469 Gene3D - 3 101 IPR012340 -
Sebi249g00108 469 SUPERFAMILY Nucleic acid-binding proteins 9 101 IPR012340 -
Sebi249g00108 469 CDD RPA1_DBD_A_like 19 99 - -
Sebi249g00108 469 Gene3D - 106 255 IPR012340 -
Sebi249g00108 469 Pfam Replication factor-A C terminal domain 297 410 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00108 Sebi-Chr249 1264189 1266981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00108 1 386 Core DNA Replication Machinery Family AT5G08020 23.284 6.83e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00108 - - gmx:102661204 267.7