Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00105 ATGAAGTTATGTACTCCATTGTTGTTTCTCTGTTTGGTTTCCACGCTCTCTTTTGTTGCTTCTGATAAAGGGCTCTCAAATGAAGTTTTGGCCCTTACAACTTTCAAAGAAGCTGTGTATGAAGATCCACATCATGTTTTGTCCAATTGGAATACTCTGGAGTCAGATCCTTGTGACTGGAATGGTGTTTCATGCACTGGCACTAGAGATCATGTCATCAAGCTAAACATATCAGGGGCATTATTAAGAGGGTTTCTTGCTCCAGAATTTGGGAAAATCTCCTACTTGGAAGCATTGATCTTGCATGGCAACAATCTCATTGGAACAATACCGAAAGAATTGGGCATGTTAAAATCTCTTAAGGTGTTGGATTTGGGAAAGAATCAAAACCTGCAGTCCAATGGGTTGACTGGTAGGTTACCTCCAGAGCTAGGAAATTTGAAGTACCTTCAAGAACTTCGGTTGGATAGGAATAAGCTTCAAGGGACTGTTCCTGCTGGTGGCAGTTCAAATTTTGATTCAAATATGCATGGAATGTATGCATCAAATGCAAATTTAACTGGCTTCTGTCGTTCATCTCAACAACTATTTGCAGATTTTTCATACAACTTTTTTGTTGGTAGCATACCTAAGTGCTTGGAGCATCTTCCAAGATCAAGCTTTCAAGGGAATTGCCTCCAGGTCAAAGACATCAAACAGAGAACTTCTGTGCAATGTGCTGGTGCTTCACCTGCTCAGAGCCATCCAGTAGTGAACCAAAAGCACCAACCTGCTGCTGAACACATGTCCAAGCATCAAGGAGCATCAAAACCTGCTTGGCTTTTGCCTCTAGAAATAGTGACTGGAACCATGGTTGGTTCCCTCTTTCTGATTGCTATTCTCACTGCTTTCCATAGATGCAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGTGAGAAAGAGAATATTGCAGTATATATAGACTCTGAGATGTTGAAGGATGTGATGAGGTATAGCAGACAAGACCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGTACAATGAAAGGTGGTCCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAAGAGAATTGGACAGGACACCTTGAACTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGCTAAATCATGATAATACAGGAAAGCTACTAGGCTATTGTAGAGAGAATGAAGAAGGGTGCCAGTTATCTTGGACACGGCGAATGAAAATCATCATAGGCATTGCACGTGGACTAAAGTATTTGCACACTGAAGTTGAGCCACCATTCACTATCTCAGAGTTGAATTCCAATGCTGTTTACCTTACAGAAGATTTTTCCCCTAAGCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAAAGCTCTGGTTCTGTTGGCAGCCAAGGTTCTGTTTGTGTTCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACGTTTATGCATTTGCAGTACTTTTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCCAGGGACTACCTTGAAATCCCAGAAGTAATGTCATATGTGGTGGATCCTGAATTGAAACATTTTAGATATGAGGACCTCAAAGTTATATGTGAGGTAGTAAGTCTTTGTATCAGTCCTGATCCCACTGTCCGTCCATCAATGCAAGAATTATGCAGTATGCTGGAGAGCAGAATTGACACATCAATAAGTGTGGACCTCAAGGCATCATCTTTGGCTTGGGCTGAACTAGCACTTTCATCATAA 1863 0.416 MKLCTPLLFLCLVSTLSFVASDKGLSNEVLALTTFKEAVYEDPHHVLSNWNTLESDPCDWNGVSCTGTRDHVIKLNISGALLRGFLAPEFGKISYLEALILHGNNLIGTIPKELGMLKSLKVLDLGKNQNLQSNGLTGRLPPELGNLKYLQELRLDRNKLQGTVPAGGSSNFDSNMHGMYASNANLTGFCRSSQQLFADFSYNFFVGSIPKCLEHLPRSSFQGNCLQVKDIKQRTSVQCAGASPAQSHPVVNQKHQPAAEHMSKHQGASKPAWLLPLEIVTGTMVGSLFLIAILTAFHRCNNKSSIIIPWKKSASEKENIAVYIDSEMLKDVMRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGHLELYFQREVADLARLNHDNTGKLLGYCRENEEGCQLSWTRRMKIIIGIARGLKYLHTEVEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKSSGSVGSQGSVCVLPNSLEARHLDTKGNVYAFAVLLLEIISGRPPYCKDKGYLVDWARDYLEIPEVMSYVVDPELKHFRYEDLKVICEVVSLCISPDPTVRPSMQELCSMLESRIDTSISVDLKASSLAWAELALSS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00105 620 SUPERFAMILY L domain-like 27 217 - -
Sebi249g00105 620 Gene3D Transferase(Phosphotransferase) domain 1 416 599 - -
Sebi249g00105 620 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Sebi249g00105 620 Gene3D Phosphorylase Kinase; domain 1 309 415 - -
Sebi249g00105 620 FunFam Nuclear pore complex protein NUP107 25 192 - -
Sebi249g00105 620 ProSiteProfiles Protein kinase domain profile. 279 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00105 620 SMART tyrkin_6 345 594 IPR020635 GO:0004713|GO:0006468
Sebi249g00105 620 FunFam Inactive receptor-like serine/threonine-protein kinase 319 421 - -
Sebi249g00105 620 Pfam Protein tyrosine and serine/threonine kinase 420 594 IPR001245 GO:0004672|GO:0006468
Sebi249g00105 620 PANTHER PROTEIN MALE DISCOVERER 2 11 618 - -
Sebi249g00105 620 SUPERFAMILY Protein kinase-like (PK-like) 325 595 IPR011009 -
Sebi249g00105 620 Gene3D Ribonuclease Inhibitor 25 237 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00105 Sebi-Chr249 1200991 1205257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00105 7 595 Receptor kinase-like Gene Family AT5G16000 28.160 2.45e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Sebi249g00105 PK_Tyr_Ser-Thr 5.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00105 - - gmx:100779744 1018.45