Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00096 ATGATGTTTTGGGTTGGGATGGGTTGTGAATTCTCCAAGTACTCAGCATGCTGCTGGGGTACAGAGCAAGGTGGTCTGGATCCTGAGGCTCACATTGATGAAAATGTAGACAACATTGAGGGCAATGACTTGCCACCCTTTCGTGAGTACACAGTTGATCAACTCAGGAAAGCTACATCTGGATTTGCTATGGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTTGTCTATAAAGGGAAACTTGAAAATCAAATGCGAATTGCTGTCAAACGGTTCAACAAATCAGCCTGGCCAGATTCCCATCAATTTTTGGAAGAGGCCAAAGCCGTCGGTCAACTGAGGAACCAAAGATTGGCAAATCTGCTCGGATGTTGCAGTGAGGGTGATGAGAGGTTACTTGTATCAGAATATATGTCCAATGAAACTTTGGCAAAGCACTTGTTCCATTGGGAAACTCAGCCCATGAAATGGGCAATGCGATTGAGAGTTGCTTTACACCTTGCCCAAGCTCTGGAGTACTGTACCAACAAAGGACGTGCACTGTATCATGACCTAAATGCCTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTTTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACAAATTTGGCATTTACTCCACCTGAGTATCTGAGGACAGGTAGAGTTACTCCAGAGAGTGTGACTTATAGCTTTGGGACCCTTTTGCTTGACCTTCTTAGTGGAAAGCATATTCCTCCAGGCCGTGCCCTGGACCTGATTAGGGACAGGAACATTGAGATGCTATCAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAATTAGTTCGCTTAGCCTCACGATGCTTACAATCTGAACCGCGAGAGCGTCCTAATCCAAGGTCATTGGTCACTGCTCTTATACCTCTACAGAAGGATTCTGAGATCCCTTCTCATGTGCTGATGGGTATACCAGATGGTACTGCTGCTTTTCCCCTTTCTCCACTCGGGGAAGCTTGTCTACGGATGGATCTGACTGCCATACATGAGGTGCTGGAGAAAATTGGATATAAAGATGATGAGGGCGCAGCAACTGAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGGAAACCATAAACTCAAAGAAGAAGGGGGATGCTGCTTTTCGGCAGAAGGACTTTAGAACTGCAATTGATAGCTATACACAGTTCATTGAGGTTGGGACCATGGTTTCTCCAACAGTTTATGCGCGTCGAAGTCTGTCTTATCTCATTAACAATATGCCAAATGAAGCACTTAATGATGCATTGCAGGCACAAGTAATATCTCCTGTTTGGTACATGGCATTTTATTTACAGACTGTGGCTCTTCTTGCGCTGGGAAAGGAGAATGACGCCCAAGTGGCACTAAAGGAGGGTTCTTCACTTGAAACTAAAAAAGGCACAAATTAG 1482 0.442 MMFWVGMGCEFSKYSACCWGTEQGGLDPEAHIDENVDNIEGNDLPPFREYTVDQLRKATSGFAMENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNKSAWPDSHQFLEEAKAVGQLRNQRLANLLGCCSEGDERLLVSEYMSNETLAKHLFHWETQPMKWAMRLRVALHLAQALEYCTNKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPGRALDLIRDRNIEMLSDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPRSLVTALIPLQKDSEIPSHVLMGIPDGTAAFPLSPLGEACLRMDLTAIHEVLEKIGYKDDEGAATELSFQMWTNQMQETINSKKKGDAAFRQKDFRTAIDSYTQFIEVGTMVSPTVYARRSLSYLINNMPNEALNDALQAQVISPVWYMAFYLQTVALLALGKENDAQVALKEGSSLETKKGTN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00096 493 FunFam probable serine/threonine-protein kinase At4g35230 386 493 - -
Sebi249g00096 493 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 34 490 IPR045845 GO:0004672|GO:0009742
Sebi249g00096 493 SUPERFAMILY TPR-like 390 489 IPR011990 GO:0005515
Sebi249g00096 493 Gene3D Phosphorylase Kinase; domain 1 37 140 - -
Sebi249g00096 493 ProSiteProfiles Protein kinase domain profile. 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00096 493 FunFam probable serine/threonine-protein kinase At5g41260 142 333 - -
Sebi249g00096 493 Gene3D Transferase(Phosphotransferase) domain 1 142 333 - -
Sebi249g00096 493 Gene3D Tetratricopeptide repeat domain 386 492 IPR011990 GO:0005515
Sebi249g00096 493 FunFam probable serine/threonine-protein kinase At4g35230 37 140 - -
Sebi249g00096 493 SUPERFAMILY Protein kinase-like (PK-like) 45 324 IPR011009 -
Sebi249g00096 493 Pfam Protein tyrosine and serine/threonine kinase 78 315 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00096 Sebi-Chr249 1125516 1130616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00096 50 341 Glycoside Hydrolase AT3G07070 33.750 3.46e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi249g00096 PK_Tyr_Ser-Thr 7.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00096 K14500 - gmx:100797107 857.055