Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00085 ATGGTGCAAGACAACATGAAGAAACAACTTGCTTTGGCTTTGAGAAGCATCCAGTGGAGCTATGCAATTTTCTGGTCTGATTCAGCTAACCAACCAGGGGTATTGAGTTGGAGGGAAGGGTATTATAATGGAGATATTAAGACTAGGAAAACAAGTCAAGGAGTAGAACTTAATTCTGATCAAATTGGGTTGCAAAGGAGTGAACAGTTGCGAGAGCTATTCAAGTCTCTCAAAACTGCAGAAATCAACCCACAACCAAAAAAGCCTTCAGCGACTCTATCCCCTGAAGATCTCACAGATACAGAGTGGTATTATTTGGTTTGTATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCTAGTGGCCAACCCATTTGGCTGAACAATGCTTCTTCCATTGATTGCAAAATTTTTAGTCGCTCTCTTTTGGCAAAGACAGTGGTGTGTTTTCCTTTTATGGAAGGGGTTATTGAGCTAGGTACAACTGAGCAGGTCTCAGAAGATCTGAGTCTCATTCAACGGATCAAAACTTCTTTCTTGAATAATCTGCATGCCAATGATCCTATTAAGTCTGGAGCTACATTGAAATCAAGGAATGAGGAAGGTGTTGATTGTGTAGCATTTGATCATAATGCTTATAATGTTGAATTAATTCCAGAAGTTGGATATGGTGTAATCAACACAACAACCTCTCCTAATGGTAGTTCAAATGCATTACAAGTCAATCAACCACCAGATGAAACATTCATGGTTGAAAGCATAAACCATGGCACCTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGCAATGGTGTCCATAACTCCATGAATTCTAGTGACTGTATATCACAATGTTTTGCCAGTCCTGAGAAGATAGCTTCTGCTCCCAAGGGCGGTACTCATTCTTTTGACCCTTGCACCCAAGACCTTGAAAAGTGCAATAACCCAAAAATGACCTTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTGCCCTTTTGAAAAGCTCAGACCAGTTAATGATGGGGATGCATTTTCAAAACTTTCATCAGGAATCAACCTTTTCTAGTTGGAAGAAAGGAGTGTCAATGTATTGCCAAAGGCCAAGAGCAGGAACCTCACAAAACTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCACATGGATGGGTTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAAGACTAGAGGCTGATGAAATTGGTATGAACCACGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATATCTTAAAAAGCTTGAGAAAAGGGTAAGAGAGTTAGAAGCTAAGAAAGAACTAATAGATATAGAGAGTAGGAGTAAAAAATCATCTCATGATATGGGGGAGAGGACTTCTGATCATTATTTTAACAAAGATAATAATGGCAAGAAACCAGTGGTAAAAAAGAGGAAAGTCTGTGACATAGAGGAGGCAGGGAGAGAGATTAATTCAGATGCTTTAAGAGGCAGTTCTACAAATGATGTTACTGTCAGTATAAGTGACAATGAAGTTGTGATAGAAATGAGGTGCCCTTGCAGAGCAGGAAGGTTGTTGGAAATTATAGAAGCAGTTAACAGTCTCAATATAGACATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATCTTTATCTGACCATTAAATCTAAGTTCACAGGACCAACTAATGCAACAGCAAAAAGGATCAAACAAACACTCCAAAAAGTGGTTTCCAAGTGTTGA 1887 0.3895 MVQDNMKKQLALALRSIQWSYAIFWSDSANQPGVLSWREGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEINPQPKKPSATLSPEDLTDTEWYYLVCMSFVFNIGQGLPGRALASGQPIWLNNASSIDCKIFSRSLLAKTVVCFPFMEGVIELGTTEQVSEDLSLIQRIKTSFLNNLHANDPIKSGATLKSRNEEGVDCVAFDHNAYNVELIPEVGYGVINTTTSPNGSSNALQVNQPPDETFMVESINHGTSQVQNWQVIDDELSNGVHNSMNSSDCISQCFASPEKIASAPKGGTHSFDPCTQDLEKCNNPKMTLVDPRSDDWHYQRVLSALLKSSDQLMMGMHFQNFHQESTFSSWKKGVSMYCQRPRAGTSQNLLKKVLFEVPRMHMDGLLESQEENDYKEGTRLEADEIGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLKKLEKRVRELEAKKELIDIESRSKKSSHDMGERTSDHYFNKDNNGKKPVVKKRKVCDIEEAGREINSDALRGSSTNDVTVSISDNEVVIEMRCPCRAGRLLEIIEAVNSLNIDIDFNSVQSTEADGNLYLTIKSKFTGPTNATAKRIKQTLQKVVSKC 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00085 628 Pfam Helix-loop-helix DNA-binding domain 428 474 IPR011598 GO:0046983
Sebi249g00085 628 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 424 473 IPR011598 GO:0046983
Sebi249g00085 628 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 487 IPR036638 GO:0046983
Sebi249g00085 628 MobiDBLite consensus disorder prediction 492 514 - -
Sebi249g00085 628 Gene3D - 423 485 IPR036638 GO:0046983
Sebi249g00085 628 SMART finulus 430 479 IPR011598 GO:0046983
Sebi249g00085 628 Coils Coil 463 490 - -
Sebi249g00085 628 PANTHER TRANSCRIPTION FACTOR TT8 3 626 - -
Sebi249g00085 628 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 184 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00085 Sebi-Chr249 1024335 1027557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00085 2 628 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.802 4.48e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi249g00085 bHLH-MYC_N 1.6e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00085 - - gmx:100808167 959.903