Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00048 ATGGTTAAAAGAGGGCACGCATACCAGTGTGATTTCACGACAAAACAGTGGGAGGAGATGGACATAAATAAGTACGGGTCAGCAGGGTGTGGACACCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACGAAGATTAACGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGGTGCAGCTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATGAAAAGTTTTTGCTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATAAGTCTAAATCTTAG 342 0.4415 MVKRGHAYQCDFTTKQWEEMDINKYGSAGCGHPFCMICWMRYVDTKINEGPYKCLTLRCPEPFCGAAVDGDMVHKLASESSMKSFCWRCGEEAHRPVDCETAHQWITKNKSKS 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00048 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 96 IPR013083 -
Sebi249g00048 113 ProSiteProfiles Zinc finger CCHC-type profile. 86 99 IPR001878 GO:0003676|GO:0008270
Sebi249g00048 113 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 73 IPR031127 GO:0004842|GO:0016567
Sebi249g00048 113 SUPERFAMILY RING/U-box 25 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00048 Sebi-Chr249 530967 531594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00048 24 113 C3H Transcription Factor Family AT2G31510 40.441 4.82e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00048 K11968 - lja:Lj3g3v3386780.1 115.161