Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00037 ATGGGCAACTGCAATAGCGGCGGCGGCGGCGCCACCTATTCCGGCGAGCCTCCCCAGCGCAACGGCCCCACTGTCCTCCCTCCCAACTCCAACCCCTCACGCCCTCCCCCACTCCCGAAACCACAACCACCCCTCTCCTCCTCCCTCGGCCGCGTTCTCGGTCGCCCCATGGAGGACGTTCGCTCCATCTACGTCTTCGGCCGCGAGCTTGGTCGAGGCCAATTCGGCGTCACCTACTTGGTCACACACAAAGTGACGAAGGAGCAATTCGCTTGCAAATCCATCGCCACCCGCAAACTCATCAACCGCGACGACATCGACGACGTTCGCCGTGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATTGTGGAGCTCAAGGGTGCCTACGAGGACCGACACTCCGTCAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATTGCCAAGGGCCACTACTCCGAGCGTGCCGCCGCTAACTCATGCCGCCAGATCGTGACGGTTGTTCATAACTGTCACTCCATGGGAGTCATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTGCTCAGCAATGACGAGAACTCGCCTCTTAAGGCCACGGATTTTGGTCTCTCTGTGTTTTTTAAGCCAGGAGATGTGTTTAAAGATCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTGCTTTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGGCATATTGATTTTGTATCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGCTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGACATTGCTGTTTTAACCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGTTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCTAAATTGGGTAGCAAACTATCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGATTTGGTCTCCCTTTGTTGATAACTGGTACATCACAACAGAAGAGTTGAAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAGACAATAAAGGAGATCATTGCTGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGAAACCCAGATATAACCCACAGACGTCGCAAATAA 1443 0.492 MGNCNSGGGGATYSGEPPQRNGPTVLPPNSNPSRPPPLPKPQPPLSSSLGRVLGRPMEDVRSIYVFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSNDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFVSDPWPSISSSAKDLVKKMLRADPKERLSAAEVLNHPWMRVDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAIWSPFVDNWYITTEELKFALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHRRRK 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00037 480 CDD EFh 370 468 IPR002048 GO:0005509
Sebi249g00037 480 Gene3D - 419 480 - -
Sebi249g00037 480 Pfam Protein kinase domain 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00037 480 Gene3D - 330 415 - -
Sebi249g00037 480 SUPERFAMILY Protein kinase-like (PK-like) 64 323 IPR011009 -
Sebi249g00037 480 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Sebi249g00037 480 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00037 480 FunFam calcium-dependent protein kinase 1 150 329 - -
Sebi249g00037 480 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 459 - -
Sebi249g00037 480 SMART efh_1 442 470 IPR002048 GO:0005509
Sebi249g00037 480 SMART efh_1 369 397 IPR002048 GO:0005509
Sebi249g00037 480 SUPERFAMILY EF-hand 361 468 IPR011992 -
Sebi249g00037 480 Gene3D Transferase(Phosphotransferase) domain 1 150 329 - -
Sebi249g00037 480 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Sebi249g00037 480 CDD STKc_CAMK 64 321 - -
Sebi249g00037 480 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Sebi249g00037 480 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Sebi249g00037 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Sebi249g00037 480 MobiDBLite consensus disorder prediction 1 52 - -
Sebi249g00037 480 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00037 480 FunFam Calcium-dependent protein kinase 1 66 149 - -
Sebi249g00037 480 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Sebi249g00037 480 MobiDBLite consensus disorder prediction 21 44 - -
Sebi249g00037 480 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Sebi249g00037 480 Pfam EF hand 443 469 IPR002048 GO:0005509
Sebi249g00037 480 Pfam EF hand 370 396 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00037 Sebi-Chr249 420278 424335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00037 50 480 EF-hand Containing Proteins AT4G23650 74.839 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi249g00037 Pkinase 2.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00037 K13412 - gmx:100777096 818.92