Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi249g00025 ATGGCCTGGAGTCAAGTGAATGTAAATAAGGTAGCAAGAAACTTCTCGTTCCCTGCTGCTGCTGGTGGAAGTGGAAAACTCCAAATGGAATTTCTACGCATTTTATCTTCCATTTACCTATTGAGTTTGATTCTCTTACAAGGAAATGCCGAACCTCTTGAAGATAAGAAGGCTTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTAGGCCTCTGAATTGGAACGAGAGCTCTTCCATGTGTGCTACTTGGACTGGAGTTACTTGCAATGAAGATAAGTCTCGTGTAATAGCCATTCGATTACCAGGGGTTGGATTTCATGGCACCATCCCACCTGATACCATTAGCCGCCTCACAGCGCTGCAAACTTTGAGCCTCAGATCCAACGTCATAACTGGGCAATTTCCTTCTGATTTTCCCAATCTCAAAAACTTGTCTTTTCTTTACCTTCAGTTCAACAATTTGTCTGGTCCTTTGCCGGATTTCTCAGCTTGGAAGAACCTTACTGTTGTCAATTTGTCTAATAACCATTTCAATGGCACCATTCCTGTCTCCCTTTCCAATTTGACTCAGCTTGCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGTGAAATTCCTGATCTCCAGTTATCCAGATTGCAGCTGCTGAATTTGTCTCACAACAATTTGCAGGGCACTGTGCCTAAATCCCTTCAGAGGTTTCCTGAGTCAGCATTCTCTGGGAATAACATTTCCCTTGGAATTTCCCCTGCTTTTTCTCCTGTGTCTCCACCGGCTTATGAGCCATCTTCGACTTCTAAGAAACATGGAAGGCTCAACGGAACGGCAATGCTGGGAATTATTGTTGCTGGTAGTCTTTTAGGCCTTGTAGCATTTTGTTATTTGATGTTTCTGTGCTGCTCAAGAAGAAGGGATGGAGATGATGAAGTCTTTAGTGGAAAGTTGCGGAAAGGGGAAATGTCTCCGGAAAAAGCAGTCTCAAGGAACCAGGATGCAAATAATAAACTGGCTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGAAAGGGCACATTTGGGACTGCATACAAGGCAATACTAGAGGATGCAACCACAGTGGTTGTGAAGAGGTTAAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAACACATGGAAATTGTGGGGAGTCTTAAACATGAGAATGTGGCTGAGCTGAAGGCATATTATTATTCCAAAGATGAGAAACTGATGGTATATGATTACTTCAGTCAGGGGAGCGTGTCTTCTATGCTGCATGGTAAAAGAGGAGAGGACAAGGTGGCTTTAGATTGGGATACTCGGCTGAGAATAGCTTTAGGTGCTGCCAGAGGCATTGCTCAGATCCATGTTGAGAATGGTGGTAAGCTTGTACATGGCAACATCAAGTCCTCAAATATCTTTCTCAATACTAAACAATATGGTTGTGTATCTGACCTTGGGCTGGCAACCATATCAAGCACACTTGCTCTGCCTATCTCACGAGCTGCTGGTTACCGAGCACCTGAAGTTACAGACACCAGGAAAGCAGCACAACCTTCAGATGTTTACAGCTTTGGTGTGGTTTTACTAGAGCTTCTCACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATTATCCACCTAGTGAGGTGGGTTCATTCAGTTGTGAGAGAGGAGTGGACAGCTGAAGTGTTTGATTTAGAGTTGATGAGATTTCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTAAGGATGCCTGATCAGAGACCTAAGATGTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATACAGGGACCAAGCCATCAGCTGAGAACCAACCGGAACTTAAATTATCTCAACGTGACAATGATAACTCCTCTTCAACTCCATCCCCATTCCCAAAAGGAAGTGAATGA 1995 0.4376 MAWSQVNVNKVARNFSFPAAAGGSGKLQMEFLRILSSIYLLSLILLQGNAEPLEDKKALLDFVNKFPPSRPLNWNESSSMCATWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLTALQTLSLRSNVITGQFPSDFPNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGTIPVSLSNLTQLAGLNLANNSLSGEIPDLQLSRLQLLNLSHNNLQGTVPKSLQRFPESAFSGNNISLGISPAFSPVSPPAYEPSSTSKKHGRLNGTAMLGIIVAGSLLGLVAFCYLMFLCCSRRRDGDDEVFSGKLRKGEMSPEKAVSRNQDANNKLAFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVAELKAYYYSKDEKLMVYDYFSQGSVSSMLHGKRGEDKVALDWDTRLRIALGAARGIAQIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSTLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRFPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDTGTKPSAENQPELKLSQRDNDNSSSTPSPFPKGSE 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi249g00025 664 ProSiteProfiles Protein kinase domain profile. 354 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00025 664 Gene3D Ribonuclease Inhibitor 164 254 IPR032675 -
Sebi249g00025 664 Pfam Leucine rich repeat 109 155 IPR001611 GO:0005515
Sebi249g00025 664 MobiDBLite consensus disorder prediction 628 664 - -
Sebi249g00025 664 Gene3D Ribonuclease Inhibitor 54 163 IPR032675 -
Sebi249g00025 664 Pfam Protein kinase domain 357 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi249g00025 664 SUPERFAMILY L domain-like 65 235 - -
Sebi249g00025 664 ProSitePatterns Protein kinases ATP-binding region signature. 360 391 IPR017441 GO:0005524
Sebi249g00025 664 PANTHER OS05G0588300 PROTEIN 34 635 - -
Sebi249g00025 664 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 429 636 - -
Sebi249g00025 664 Gene3D Transferase(Phosphotransferase) domain 1 429 650 - -
Sebi249g00025 664 SUPERFAMILY Protein kinase-like (PK-like) 358 622 IPR011009 -
Sebi249g00025 664 Gene3D Phosphorylase Kinase; domain 1 319 428 - -
Sebi249g00025 664 Pfam Leucine rich repeat N-terminal domain 54 90 IPR013210 -
Sebi249g00025 664 MobiDBLite consensus disorder prediction 626 664 - -
Sebi249g00025 664 FunFam Probable inactive receptor kinase RLK902 53 210 - -
Sebi249g00025 664 FunFam pollen receptor-like kinase 1 323 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi249g00025 Sebi-Chr249 316442 319430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi249g00025 29 657 Receptor kinase-like Gene Family AT4G23740 64.752 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi249g00025 Pkinase 9.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi249g00025 - - gmx:100804799 1051.58