LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi248g00025	ATGGTTAAGCATAACAATGTTATCCCTAACGGACACTTCCGTAAGCATTGGCAAAACTATGTGAAGACCTGGTTCAATCAACCAGCACGGAAGACAAGAAGACGCCAAGCCCGTCAAAAGAAAGCTGTGAAGATTTTCCCCAGGCCTACTGCTGGACCTCTTAGGCCTATTGTTCATGGACAAACCTTGAAATACAACATGAAAGTCAGAGATGGTAGAGGATTTTCTCTTGAAGAGCTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGCAGGAACCGTTCATTGGAAAGCCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGTGCACGCAAGGTTAAGGCTGGTGATTCTACGCCTGAGGAACTTGCAAATGCCACACAAGTCCAGGGTTCATACTTGCCCATTGTGAGGGAGAGGCCATCTGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGAGTTTAAAGCTTATTACAAGCTTCGGCTTGAACGGACAAACAAACGCCATTATGGTGCTAGACTGAAGAAGGCTGCTGAAGCAGAAAAGGAAGAGAAGAAGGGACTCTATGTTCAAGGCTACTCACCCACCATTCATCCAACCACATCCACTGATCTCTCTTCCATTGCCACATTTGATGTGTTATCAGGATCATCAGCTCCTCAACACAGTGATCTCACAATGTTAAGAGTTATTTATGGCATCATGAATGCTATCTCATGGGGTATTCTGTTACCAATTGGAGCCATAACTGCACGTTATCTTAGGCACATTCAAGCATTAGGCCCTGCATGGTTCTATGCTCATGCAGGGATACAATTGTTTGCTTTTGTTCTTGGAACTGTGGGGTTTGCAATTGGGATTCGTCTTGGGGAAATGTCTCCTGGAGTGGAGTATAGGCTGCACAGGAAGCTTGGAATTGCAGTGTTTTGTTTGGGGGCTTTGCAGACTCTGGCATTGTTGTTTAGGCCTAATATAAGGAACAAGTTCAGGAAGTATTGGAAATCTTATCACCATTTTGTTGGGTATTCTTGTGTGGTGCATGGGTTTGTGAATGTGTTTGGGGGGTTTGAAGTGATGGGGGCAAGCAGGTCTTATGCTACGTTGAGTTATTGCTTGGGACTTTCTACTATGATTGGTGTTTGTATAGCTTTGGAGCTGAATTCTTGGGTTGTGTTATGTAGGAAATCAAAGGAAGAGAAGATGAGGCGAGAGGGTCTTATTGGGAGTTCTGACAAAGGGAGCAGTGGCATCCATAACCATAATTGA	1329	0.4462	MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRQARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRDGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVRERPSVELVKVTDEMKEFKAYYKLRLERTNKRHYGARLKKAAEAEKEEKKGLYVQGYSPTIHPTTSTDLSSIATFDVLSGSSAPQHSDLTMLRVIYGIMNAISWGILLPIGAITARYLRHIQALGPAWFYAHAGIQLFAFVLGTVGFAIGIRLGEMSPGVEYRLHRKLGIAVFCLGALQTLALLFRPNIRNKFRKYWKSYHHFVGYSCVVHGFVNVFGGFEVMGASRSYATLSYCLGLSTMIGVCIALELNSWVVLCRKSKEEKMRREGLIGSSDKGSSGIHNHN	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi248g00025	442	ProSiteProfiles	Cytochrome b561 domain profile.	215	414	IPR006593	-
	Sebi248g00025	442	Gene3D	-	228	423	-	-
	Sebi248g00025	442	Pfam	Ribosomal protein L13e	7	185	IPR001380	GO:0003735\|GO:0005840\|GO:0006412
	Sebi248g00025	442	FunFam	60S ribosomal protein L13	166	207	-	-
	Sebi248g00025	442	Hamap	50S ribosomal protein L13e [rpl13e].	45	128	IPR001380	GO:0003735\|GO:0005840\|GO:0006412
	Sebi248g00025	442	ProSitePatterns	Ribosomal protein L13e signature.	70	84	IPR018256	GO:0003735\|GO:0005840\|GO:0006412
	Sebi248g00025	442	PANTHER	60S RIBOSOMAL PROTEIN L13	1	207	IPR001380	GO:0003735\|GO:0005840\|GO:0006412
	Sebi248g00025	442	CDD	Cyt_b561_FRRS1_like	215	407	-	-
	Sebi248g00025	442	SMART	561_7	254	377	IPR006593	-
	Sebi248g00025	442	Gene3D	-	167	207	-	-
	Sebi248g00025	442	Pfam	Eukaryotic cytochrome b561	287	377	IPR006593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi248g00025	Sebi-Chr248	764280	767056	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi248g00025	2	192	Cytoplasmic Ribosomal Protein Gene Family	AT3G49010	87.435	3.44e-123	355

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi248g00025	-		-	gmx:100799859	413.305