Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi248g00020 ATGGTTAAGCATAACAATGTTATCCCTAACGGACACTTCCGTAAGCATTGGCAAAACTATGTGAAGACCTGGTTCAATCAACCAGCACGGAAGACAAGAAGACGCCAAGCCCGTCAAAAGAAAGCTGTGAAGATTTTCCCCAGGCCTACTGCTGGACCTCTTAGGCCTATTGTTCATGGACAAACCTTGAAATACAACATGAAAGTCAGAGATGGTAGAGGATTTTCTCTTGAAGAGCTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGCAGGAACCGTTCATTGGAAAGCCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGTGCACGCAAGGTTAAGGCTGGTGATTCTACGCCTGAGGAACTTGCAAATGCCACACAAGTCCAGGGTTCATACTTGCCCATTGTGAGGGAGAGGCCATCTGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGAGTTTAAAGCTTATTACAAGCTTCGGCTTGAACGGACAAACAAACGCCATTATGGTGCTAGACTGAAGAAGGCTGCTGAAGCAGAAAAGGAAGAGAAGAAGGGACTCTATGTTCAAGGCTACTCACCCACCATTCATCCAACCACATCCACTGATCTCTCTTCCATTGCCACATTTGATGTGTTATCAGGATCATCAGCTCCTCAACACAGTGATCTCACAATGTCAAGAGTTATTCATGGTACCATGAGTGCTATCTCATGGGGTATTCTGTTACCAATGGGAGCCATAACTGCACATTATCTTAGGCACATTCAAGCATTAGGCCCTGCATGGTTCTATGCTCATGCAGGGATACAATTGTTTGCTTTTGTTCTTGGAACTGTGGGGCCTAATACAATGAACAAGTTCAGGAAGTATTGGAAATCTTATCACCATTTTGTTGGGTATTCTTGTGTGGTGCTTGGGTTTGTGAATGTGTTTGGGGGGTTTGAAGTGATGGGAGCAAGCAGGTCTTATGCTAAGTTGAGTTATTGCTTGGGACTTTCTACTATGATTGGTGTTTGTATAGCTTTGGAGGTGAATTCTTGGGTTGTGTTCGGTAGGAAATCAAAGGAAGAGAAGATGAGGCGAGAGGGTCTTATTGGGAGTTCTGACAAAGGGAGCAGTGGCATCCATAACCATAATTGA 1209 0.4458 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRQARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRDGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVRERPSVELVKVTDEMKEFKAYYKLRLERTNKRHYGARLKKAAEAEKEEKKGLYVQGYSPTIHPTTSTDLSSIATFDVLSGSSAPQHSDLTMSRVIHGTMSAISWGILLPMGAITAHYLRHIQALGPAWFYAHAGIQLFAFVLGTVGPNTMNKFRKYWKSYHHFVGYSCVVLGFVNVFGGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFGRKSKEEKMRREGLIGSSDKGSSGIHNHN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi248g00020 402 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sebi248g00020 402 Gene3D - 167 207 - -
Sebi248g00020 402 CDD Cyt_b561_FRRS1_like 215 367 - -
Sebi248g00020 402 SMART 561_7 252 369 IPR006593 -
Sebi248g00020 402 ProSiteProfiles Cytochrome b561 domain profile. 215 402 IPR006593 -
Sebi248g00020 402 FunFam 60S ribosomal protein L13 166 207 - -
Sebi248g00020 402 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sebi248g00020 402 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Sebi248g00020 402 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi248g00020 Sebi-Chr248 640688 643343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi248g00020 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 87.435 7.09e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi248g00020 K02873 - gmx:100805957 380.948