Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi246g00041 ATGGCTGGAATTGTTCTGTTCTGCATTGTATCATTGTTCTCTCATTTTGCTGCAACAAATGCTAGAATCCCTGGAGTTTACAGCGGTGGCCCCTGGCAGAGTGCTCATGCTACTTTCTATGGTGGCAGTGATGCCTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAACTTGTACAGCCAAGGCTATGGGGTGAACACTGCAGCACTAAGCACAGCACTGTTCAACAATGGCTTGAGCTGTGGTGCATGCTTTGAGATCAAGTGTGACCAAGATCCCCATTGGTGCAACCCTGGAAGCCCTTCCATTTTAATCACTGCAACCAATTTTTGCCCACCAAACTTTGCTCTTCCCAGTGACAATGGTGGATGGTGCAACCCACCAAGACCACACTTTGACCTTGCCATGCCAATGTTCCTCAAGATCGCTCAATACCGTGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGCCATGCAGAAAGAGCGGAGGGATCAGATTCACAATCAACGGTTTTCGTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGAGATATCGTGCGCGTGAGTGTGAAAGGAAGCAACACAGCATGGATGAGCATGAGCCGTAACTGGGGGCAAAACTGGCAATCCAATGCTGTTTTGGTGGGCCAGGCCCTTTCTTTTAGAGTCACCGGCAGTGACCGTCGTACCTCAACGTCATGGAACGTGGCACCACCTAATTGGCATTTCCCTCTTCTAACTTTCCTCTATTTTCCCGGGAAAGTTTTGAAGGGGCTAGTAGGGTTAAAAGGGTAG 807 0.5019 MAGIVLFCIVSLFSHFAATNARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPHWCNPGSPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPPNWHFPLLTFLYFPGKVLKGLVGLKG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi246g00041 268 FunFam Expansin 21 160 - -
Sebi246g00041 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Sebi246g00041 268 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Sebi246g00041 268 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Sebi246g00041 268 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Sebi246g00041 268 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Sebi246g00041 268 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Sebi246g00041 268 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Sebi246g00041 268 SMART dpbb_1 67 154 IPR007112 -
Sebi246g00041 268 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Sebi246g00041 268 SUPERFAMILY PHL pollen allergen 161 247 IPR036749 -
Sebi246g00041 268 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Sebi246g00041 268 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Sebi246g00041 268 CDD DPBB_EXPA_N 31 159 - -
Sebi246g00041 268 Gene3D - 164 249 IPR036749 -
Sebi246g00041 268 Gene3D - 18 160 IPR036908 -
Sebi246g00041 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 245 IPR007117 -
Sebi246g00041 268 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Sebi246g00041 268 PANTHER EXPANSIN-A15 19 248 IPR002963 GO:0009664
Sebi246g00041 268 FunFam Expansin 164 253 - -
Sebi246g00041 268 Pfam Lytic transglycolase 67 154 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi246g00041 Sebi-Chr246 1342366 1345052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi246g00041 4 247 Expansin Gene Family AT2G39700 84.016 1.17e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi246g00041 - - gmx:547955 493.812