Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi246g00022 ATGAATCTCTCAACACTGGACAACCAAGTAACCCTGCTAAAGAGGCAGCTCCTCCCTCTTCCTATTTTTTCAGTTTGCTGCAGTGCCGTTAGCATAGCATTGGAGCACTTGCTCGGTTCGCAAATTCAACATGGTTCGTATGCTCCTCTTATCACTCCTTTCTTTGATGCTTTTTTGAATCTCACCTTCGCTAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCTCCTAAGCCCTCGTCTGGACCACACAAATCTAGGGAATGTCTCCCTCTCATTCTCATTCTGCGAAACAGGCTGAAATATGCTCTGACATACCGTGAAGTCATTGCTATTTTGATGCAGCGCCATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAGACATATCCAGCTGGTTTCATGGATGTCGTGTCAATCCCTAAAACAAATGAGAACTTCCGCCTTCTTTATGACACTAAAGGCCGATTCCGGCTACACTCAGTCAGGGATGACGAGGCGAAGTTTAAGCTCTGCAAGGTTCGATCAATACAGTTTGGGCAAAAGGGTATCCCATACCTGAACACCTATGATGGTCGTACTATCCGCTATCCAGACCCTCTCATCAGGGCTAATGACACCATTAAGCTGGATCTGGAGGAAAATAAGATTGTTGATTTCATCAAATTTGATGTAGGGAATGTAGTTATGGTAACAGGTGGAAGGAACAGGGGACGTGTTGGAGTGATCAAGAATAGGGAGAAGCACAAGGGAAGCTTTGAGACAATCCATGTTCAGGATGCCACTGGGCATGAATTTGCAACACGTATGGGCAATGTCTTCACTATTGGCAAGGGGACAAAACCATGGGTATCTCTTCCCAAGGGTAAAGGTATTAAGCTATCAATCATTGAGGAGGCTAGGAAGAGGATTGCTGCCCAACAAGCAACTGCTGCTTAA 981 0.4567 MNLSTLDNQVTLLKRQLLPLPIFSVCCSAVSIALEHLLGSQIQHGSYAPLITPFFDAFLNLTFARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIAAQQATAA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi246g00022 326 FunFam 40S ribosomal protein S4 237 307 - -
Sebi246g00022 326 Pfam S4 domain 109 152 IPR002942 GO:0003723
Sebi246g00022 326 SMART kow_9 236 263 IPR005824 -
Sebi246g00022 326 CDD KOW_RPS4 237 291 IPR041982 -
Sebi246g00022 326 Gene3D - 237 307 IPR014722 -
Sebi246g00022 326 ProSiteProfiles S4 RNA-binding domain profile. 104 166 - -
Sebi246g00022 326 FunFam 40S ribosomal protein S4 184 234 - -
Sebi246g00022 326 CDD S4 113 174 - -
Sebi246g00022 326 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 65 316 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi246g00022 326 FunFam 40S ribosomal protein S4 63 179 - -
Sebi246g00022 326 Pfam Ribosomal family S4e 157 231 IPR013845 -
Sebi246g00022 326 Pfam RS4NT (NUC023) domain 65 101 IPR013843 -
Sebi246g00022 326 Gene3D - 63 179 IPR036986 GO:0003723
Sebi246g00022 326 ProSitePatterns Ribosomal protein S4e signature. 70 84 IPR018199 -
Sebi246g00022 326 SMART s4_6 104 168 IPR002942 GO:0003723
Sebi246g00022 326 Gene3D - 184 234 IPR038237 -
Sebi246g00022 326 Pfam 40S ribosomal protein S4 C-terminus 274 320 IPR032277 -
Sebi246g00022 326 Hamap 30S ribosomal protein S4e [rps4e]. 69 300 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi246g00022 326 Pfam KOW motif 239 272 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi246g00022 Sebi-Chr246 562296 564523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi246g00022 63 324 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.985 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi246g00022 K02987 - gmx:100795220 508.449