Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi245g00056 ATGGTAGAATGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCCTGTGCTTGCAGAGGAACCTTGAAGTTTGCTCACACCAAATGTGTTCAACTATGGTGCTACGAGAAGGGTGATACAATTTGTGAGATCTGCCATCAGCCGTTCAGACGTGGTTATACTGCTACATCACCTTTCTACCATCCTGAAGATACTTCAATTGATATCAGGGAGGACTGGGCAACCTCAAGTGATCATTTAGATTTGCATGATCCTCGACTTTTTGCTATTGCAGCTGTTGAGCACCGAATGCTAGAGGCTGAGCATGAAGATTATGTCCGTACTGGCATAAGTGGAACTACAATGTGTCGGTCTGCTGCTCTAATTTTGATGGCTCTTTTATTTCTGAGGCATGCTGCTGCCCTCTTCAATGCTGATGTGGAGAAAGCTTTAATCTATTTTTCTTTTTTCTTCCTTTGGGCTGCTGCTGTTGTCCTTCCCTGCTATTTTTTTGCCTGGATCATTCGCGTAATTCAGCATCAAAGGCAAAGACAAGTTACTACCCCATGCTTATTCTATTGTTGA 576 0.4323 MVECRICQEDDTLQNLDIPCACRGTLKFAHTKCVQLWCYEKGDTICEICHQPFRRGYTATSPFYHPEDTSIDIREDWATSSDHLDLHDPRLFAIAAVEHRMLEAEHEDYVRTGISGTTMCRSAALILMALLFLRHAAALFNADVEKALIYFSFFFLWAAAVVLPCYFFAWIIRVIQHQRQRQVTTPCLFYC 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi245g00056 191 CDD RING_CH-C4HC3_MARCH 4 50 - -
Sebi245g00056 191 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 182 IPR033275 -
Sebi245g00056 191 SUPERFAMILY RING/U-box 3 54 - -
Sebi245g00056 191 SMART ringv_2 3 50 IPR011016 GO:0008270
Sebi245g00056 191 Pfam RING-variant domain 4 49 IPR011016 GO:0008270
Sebi245g00056 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Sebi245g00056 191 Pfam Protein of unknown function (DUF3675) 56 172 IPR022143 -
Sebi245g00056 191 ProSiteProfiles Zinc finger RING-CH-type profile. 1 56 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi245g00056 Sebi-Chr245 1130701 1133744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi245g00056 3 55 C3H Transcription Factor Family AT2G37950 35.714 6.83e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi245g00056 - - gmx:100795900 276.559