Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi245g00055 ATGGAGAATCAGCAACTCATGAGTTGGAATTTTAACTATGAAATAGAAGATTATCCATTATTTGAACCTACGTGCCCATTATCTTCATATGATTTTTGCAGGGGTAATGCTAGTGATGATGGGTATGTTTCATTGGATTGGCCATATGGAAATGGATTTCCCATCCAAGATAGCATTTCTGATGTTATCCCTTTTGTGGAATGTTATCATCCTGAACTTCTCTATGAAGCTCTGCCCACTGAACCAACAACACCATTAAGCGTCCAAGACTATGATATCTGTGATGTTAAAAATGTGCTTTCTGTGTGGAATGAACTTGATGCTGGGTTTGAGTCAGAGAAATCTGTTTCTTCAACATGCAACAATATTAGAGAAAGTGAAAAGGAAAAAGATTTGAAGGGTAAGCAATGCAGTGAAGAGAATATTAACAGTGCCAGAATGTTATCAAGGAAGAACATTTCCCAGTACTTCTACATGCCAATATCAAAAGCAGCTAGAGAACTTAATGTGGGGCTGACACATTTGAAGAAAAGGTGCAGGGAGTTAGGAATTCAGAGGTGGCCTCATAGGAAGCTAATGAGCCTTCAAACCCTTATAAAGAATGTACAAGAGCAAGGAGAGTTTGGGCATGGAAGTGATGAGAAAATAAGGAATGTGATTGAGATATTGGAAAAAGAAAAGATGGTGGAGGAAATGCCAGATTTGGAACTTGAAGAAAATACGAAAAGGCTTAGACAAGCGTGTTTTAAGGCCAATTACAAGAAGAGGAGACTCATGGTCATGGGGTTGATGGAAATGGAGTATTCTTCTCTCAGTGGCAGTACTAATAGTGCATGA 837 0.3871 MENQQLMSWNFNYEIEDYPLFEPTCPLSSYDFCRGNASDDGYVSLDWPYGNGFPIQDSISDVIPFVECYHPELLYEALPTEPTTPLSVQDYDICDVKNVLSVWNELDAGFESEKSVSSTCNNIRESEKEKDLKGKQCSEENINSARMLSRKNISQYFYMPISKAARELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNVQEQGEFGHGSDEKIRNVIEILEKEKMVEEMPDLELEENTKRLRQACFKANYKKRRLMVMGLMEMEYSSLSGSTNSA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi245g00055 278 Pfam RWP-RK domain 148 195 IPR003035 -
Sebi245g00055 278 ProSiteProfiles RWP-RK domain profile. 128 215 IPR003035 -
Sebi245g00055 278 PANTHER PROTEIN RKD4 138 260 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi245g00055 Sebi-Chr245 1084139 1085289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi245g00055 53 257 AtRKD Transcription Factor Family AT1G18790 43.810 8.88e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi245g00055 RWP-RK 5.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi245g00055 - - psat:127081291 341.658