Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi245g00035 ATGGCAAATGAACCTGAAGGCTTGGCATCGGACACGCTTCATTATGTTTACGAGCTTGTGCAGAATGGCAATGCAGCATTTCGAGAAAACAGAATGGAAGAGGCGATCAGCTTTTACTCAAGAGCCAATAACATCAAATCTAGTGATCCAATCATCCTCAGCAATCGAAGCACAGCTTATATTAGGATTAGCCAATATTTAATGCACAGAACACCATCATCTTCGGAACATAGGCCATTGACTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTGAAGGATGCCGAGAAGCTTGTTGAACTCCAAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGCTCTTCGTCTGTTGGAGAAATTTGAGAAGGCTCGTGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGATTCTCTTCAACATTTGGAAAGAGTATCATCTAGTTCAACACGGGTAAGTAGACAAGGACAACCAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACTCCTTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGAATGAAGGTTTAATCAACGCTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTCGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGACTTATGATAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTATGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCGGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTATCGGGTTGCAGAGGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAGAGAGAGAGAAACTTTACAGGAATTGACATATAACGCAGCAGAAAGTGCCCGGTCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGACTTGAGAGACTCCTGAATGTTGAAGCAATGATGCCCTCACCAAAAGACCCCGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAATCGGAGGCCTTCGGAAAGATTGGATCTCCTACGTATTAAAGATACCACAGAGAGGATTAGACGAGGCCTGATATTTCTTCGACAAGAGGAACAAGGCTGCAGAATTCAGTAA 1395 0.4222 MANEPEGLASDTLHYVYELVQNGNAAFRENRMEEAISFYSRANNIKSSDPIILSNRSTAYIRISQYLMHRTPSSSEHRPLTGLDPTTLAELGLKDAEKLVELQSNSVKSYLLKANALRLLEKFEKARDVILSGLQVDPFSNSLRDSLQHLERVSSSSTRVSRQGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQENEGLINAGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMIRRIMEGNHRMGMVIIDSSTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTRERETLQELTYNAAESARSWIARAKEAARQDQRRLERLLNVEAMMPSPKDPERFSFWLATLSNRRPSERLDLLRIKDTTERIRRGLIFLRQEEQGCRIQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi245g00035 464 PANTHER RING FINGER PROTEIN 127 16 457 - -
Sebi245g00035 464 ProSiteProfiles Lon N-terminal domain profile. 255 456 IPR003111 -
Sebi245g00035 464 Pfam ATP-dependent protease La (LON) substrate-binding domain 258 455 IPR003111 -
Sebi245g00035 464 SMART lon_5 257 456 IPR003111 -
Sebi245g00035 464 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Sebi245g00035 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 253 IPR013083 -
Sebi245g00035 464 Gene3D Tetratricopeptide repeat domain 15 152 IPR011990 GO:0005515
Sebi245g00035 464 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Sebi245g00035 464 Coils Coil 386 406 - -
Sebi245g00035 464 SUPERFAMILY TPR-like 15 143 IPR011990 GO:0005515
Sebi245g00035 464 Gene3D - 390 456 - -
Sebi245g00035 464 SMART tpr_5 16 49 IPR019734 GO:0005515
Sebi245g00035 464 SMART tpr_5 107 140 IPR019734 GO:0005515
Sebi245g00035 464 Gene3D - 256 358 IPR046336 -
Sebi245g00035 464 SUPERFAMILY PUA domain-like 258 454 IPR015947 -
Sebi245g00035 464 CDD RING-HC_LONFs_rpt2 171 215 - -
Sebi245g00035 464 SUPERFAMILY RING/U-box 169 237 - -
Sebi245g00035 464 Pfam Zinc finger, C3HC4 type (RING finger) 174 211 - -
Sebi245g00035 464 SMART ring_2 174 211 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi245g00035 172 244 C3H Transcription Factor Family AT2G42030 34.667 2.81e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi245g00035 - - lja:Lj0g3v0312049.1 835.869