LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi245g00031	ATGGGCTGTGTGAGTTCCAAGCAGGCGGTGTCGGTCACGCCCGCGATCGACCACTCAGGCGCGTTTGGAAGAAAAACGGTTATCGACTCGGATAATAATAAGAAGAGGAGTGAGTCAGGGAGAGCGAGTCAGAGCGAGGTCGGTGAGTCAGGGAGAACGAGTTCAAACGGTTGCGACTCCTTGAGCTTCAGGTTGGGGAACCTCCACAAGTACGTGCAAGGTGAACACGTGGCAGCTGGATGGCCGGCCTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCACGGCTGGATTGGACAGGGGACTTATAGCAGTGTGTTTCGGGCTAGAGAGCTTGAGACAGGGAAGATAGTGGCTCTGAAGAAGGTGCGGTTCGATAATTTCGAACCGGAGAGTGTGAGGTTCATGGCAAGGGAAATAATGATTCTGAGGAGACTCGATCATCCCAATATCATAAAACTGGAAGGGTTAATTACTTCCAGATTATCGTGTAGCATATACCTTGTGTTCGAGTACATGGAGCATGACATTACAGGGCTCTTATCCTCTCCTGATATCAAGTTCAGTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTATCTGGTCTTGAGCATTGTCACTCGCGGGGAGTGATGCACAGGGACATTAAGGGATCGAATCTTCTGGTGAATAATGAAGGGGTATTGAAGGTGGCGGATTTTGGATTGGCGAATTTCATCAGTGCTGGGCACAGGCAGCCCCTTACTAGTCGTGTTGTCACGTTGTGGTACCGTCCACCGGAGCTTTTGCTTGGTTCGACAGATTATGGTCCTTCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAGCTACTTGTTGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCCCATGCGACTTTGTTTAAGCCACAGCAACCATATGATAGCTGCCTCCGAGAGTCCTTTAGAGATTTGCCTCCAGCCAGTGTAAATCTACTACAAACTCTTCTTTCTGTCGAACCGTACAAACGTGCGACTGCCGCATCTGCTCTCTCATCTGAGTATTTCAAAACAAAACCTTATGCATGTGATCCATCAAGCTTGCCGATATACCCACCCAGCAAGGAAATTGATGCAAAACAAAGGGAGGAGTCCAGGAAAAAGATTGGTGGACGAGTTCGTGGAACTGAAACAAGAAAATCATCAAGAAAGCCACTAGGATTCAATAAACTAGCCCCAGCAGAGGATTTGGCAAGTCAAACCCAGACCTCCCAAAAGGTCAACGGTAGATCATTCCGCGTCCTTAAAGAAGAAAAGACTAACATAGGTGAGGAGGCACAAAAGCCATCCAGTGGCAAACCTGAAGATGCTTCCCATATGAAGAATGCGTCTCAGGGAGATATTCCCTTTTCTGGACCATTACAAGTTTCAACATCAAGCGGCTTTGCATGGGCAAAAAGCCGTAGAGATGAGACTTCAATTCGATCCCATTGTCGAACTATTTCTCGAGGACATATTTTCAATCCTTTAGAACCTTCTAAATTAAATTCAAGGAATAATTCAGACACCATAAACCAGGAAAATAAGGAGTTTTGTGGAAGACACACCAACTCTAGGGGCCATGATCTGCTTGAAATTTCTAAGCTTTCAATGCAGAATCAGTGGAGCAAGTTTGATCGCCCTGATTCATTTGATGCCTCTGATGAGTACCACTCGCAAGAACTCTCTATGGCACTTTATCATAGAGAAGATTCAGTATCCAAGAGAAGTAACATAAGTTTTCAGGATCAAGGAGAAAAGGTTGAATTTTCAGGACCCCTACTATCTCAAATGCACACTGTTGATGAGCTCTTAGAAAGGCATGAACGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGCATGGGAAGTAA	1986	0.4637	MGCVSSKQAVSVTPAIDHSGAFGRKTVIDSDNNKKRSESGRASQSEVGESGRTSSNGCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFISAGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRESFRDLPPASVNLLQTLLSVEPYKRATAASALSSEYFKTKPYACDPSSLPIYPPSKEIDAKQREESRKKIGGRVRGTETRKSSRKPLGFNKLAPAEDLASQTQTSQKVNGRSFRVLKEEKTNIGEEAQKPSSGKPEDASHMKNASQGDIPFSGPLQVSTSSGFAWAKSRRDETSIRSHCRTISRGHIFNPLEPSKLNSRNNSDTINQENKEFCGRHTNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSVSKRSNISFQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKHGK	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi245g00031	661	SUPERFAMILY	Protein kinase-like (PK-like)	93	382	IPR011009	-
	Sebi245g00031	661	MobiDBLite	consensus disorder prediction	23	55	-	-
	Sebi245g00031	661	CDD	STKc_CDK9_like	97	375	-	-
	Sebi245g00031	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	211	223	IPR008271	GO:0004672\|GO:0006468
	Sebi245g00031	661	FunFam	probable serine/threonine-protein kinase At1g54610	174	413	-	-
	Sebi245g00031	661	Pfam	Protein kinase domain	96	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi245g00031	661	SMART	serkin_6	91	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi245g00031	661	MobiDBLite	consensus disorder prediction	386	493	-	-
	Sebi245g00031	661	Gene3D	Phosphorylase Kinase; domain 1	92	173	-	-
	Sebi245g00031	661	ProSiteProfiles	Protein kinase domain profile.	91	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi245g00031	661	MobiDBLite	consensus disorder prediction	450	474	-	-
	Sebi245g00031	661	MobiDBLite	consensus disorder prediction	28	42	-	-
	Sebi245g00031	661	FunFam	probable serine/threonine-protein kinase At1g54610	87	173	-	-
	Sebi245g00031	661	MobiDBLite	consensus disorder prediction	434	449	-	-
	Sebi245g00031	661	MobiDBLite	consensus disorder prediction	395	423	-	-
	Sebi245g00031	661	Gene3D	Transferase(Phosphotransferase) domain 1	174	412	-	-
	Sebi245g00031	661	ProSitePatterns	Protein kinases ATP-binding region signature.	97	120	IPR017441	GO:0005524
	Sebi245g00031	661	PANTHER	CELL DIVISION PROTEIN KINASE	96	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi245g00031	Sebi-Chr245	594136	599017	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi245g00031	97	434	Core Cell Cycle Gene Families	AT5G10270	48.870	3.63e-111	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Sebi245g00031		Pkinase	3.8e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi245g00031	-		-	gmx:100803328	1192.18