Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi245g00026 ATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTAGTCTGTTTCTTGATCCTCTTCTCAGGTAAATTTGTTGCTGGGGATTCATTGGATACTGACAAACAAGTTCTGCTGAAGCTGAAATCATACTTGGAAACTCAAACATTTGCAAATAAAGGAGGATATATAAACTGGAACAAGAACAGCTCAAATCCTTGTGAATGGTCAGGAATATCTTGCAGTCTCTTCAACGGGACAACATGGAGGGTTGTGAGTGTAGACATCTCTGCTAGTGAGATAGCTGGTAAGATATTCCAGAATTTCTCTCTTCTCACAGAGCTCACACACCTTGATGTCTCTTGGAATACACTTTCTGGGGAGATTCCTGAGGATTTGAGGAAGTGTCACAAGCTTCAGTATCTCAATATCTCCCGTAATATTCTTGAGGGAGAGCTGAATTTGACTGGCCTGACACGTTTGCAAACACTGGATTTGTCTGTGAATAGATTTCATGGTGATCTTGGGTTGAATTTCCCTGCCATTTGTGACAATTTAGTCACTTTGAATATTTCAGATAATTACTTTACTGGGAGGATTGATAGCTGCTTTGATCAATGCCTGAGATTGCAGAACTTGGATTTGAGCACCAACAATCTAGGTGGGGGCCTATGGACTGGAATTTCAAGGCTGAGAGAGTTTTCAATTTCAGAGAATAATCTCAGTGGGGTTGTTCCTTCCCATGCTTTTCCAGGGAATTGCAGTCTCATAAAACTGGATCTTTCAGTAAATGGGTTTGTTGGTAAACCCCCCAAGGAGGTTGCTAATTGTAAGAATTTAGAGATTCTCAATCTTTCTAGTAATAATTTTACTGGAGATATTCCCAAAGAAATTGGTTTCATTTCAGGTCTTCAATCATTGTTCTTGCAGAACAATAGTTTTTCAAGAGATATTCCACAGACCCTTTTGAATTTGTCCAACTTGTTTATCTTGGATTTGAGCAGAAACCGGTTTGGTGGGGAGATACAGGAGATTTTTGGGAAATTCAAGCAAGTGAAGTTTCTTCTGCTGCACTCAAATTCTTACACTGGAGGATTGAAAACATCAGGCATTTTTTCATTGACAAACGTTAGCAGGTTAGAGCTAAGCTTCAATAACTTTTCAGGTCCATTACCTGCTGAAATCTCTCAAATGTCTGGTCTCACTTTCCTATCATTATCCTCAAACCAGTTCAGTGGACCTATTCCATCTGAATTGGGAAAATTGACTCACCTGCTAGGACTTGATCTTTCCTCCAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCCCTCTTGTGGTTAATGCTTGCACATAATTCATTAACTGGAGAAATCCCACCAGAGTTGGGAAACTGCTCAAGCTTGTTATGGTTGAACCTGGCAAACAACAAACTCTCTGGAAAATTTCCTTCTGAATTAACAAAAATTGGAAGAAATGCCATGGCCACATTTGAGTCAAATAAAAGAAGTATTGGCAGAGTTGTTGCTGGCAATAGTGAATGTTTATCAATGAGGAATTGGGTACCTGCTGATTACCGTCCATTCAGCTTTGTGTATACCATCCTAACAAGGAAGAATTGTAGAGCCCTTTGGGACAGATTGCTCAAAGGATATGGTATTTTCCCTATGTGCACATATGAGACCTCTTCAAGATCATTACATTCAGCTGGGTATGTTCAGTTAAGTGGGAACCAGCTAACTGGTGAAATTCCTCCAGAAATTGGGACCATGCTGAACTTCAGTATGTTGCATTTGGGGGACAACAAATTCTCTGGGAAATTCCCTCCAGAAATGGTGAGTATGCCACTTGTAGTCTTGAACATCACCAGAAACAAGTTTTCAGGTGAAATTCCAAAGGGAATTGGCAACATGAAGTGTCTGCAGAATCTTGATTTGTCTTGGAACAATTTCTCAGGGAAATTTCCCACAAGTTTGGTCAACTTGGATGAGCTTAGCCGTTTCAACATCTCATACAATCCTTTCATATCTGGTGCAGTCCCACCAGAAGGACACTTACTTACTTTTGACAAAGATTCATATTTGGGTGACCCTCTCCTAGACCTCCCAGAGTTCTTCAATAACATCACAGATGGAAGAAATAGGACCTTTCACAGGAGCCTGAAAAAATCCACAAAATGGTCTCTGTGTGTGGCCCTAACACTGTCTGTCTTGGTCTTTGGACTTCTTTTTCTAACAGTCTATTTCTTGGTGAAAGGTCCATCTGTGGAATCAGGATACCTCCTTAGGGATAAAAACCAGGGCCATGATTCAAGTAGCTCTGGATCCTCACCATGGTTGTCTGATACTGTTAAGATATTCCACTTGAACAACACAGTCTTCACACATGCTGACATCTTGGAAGCAACTGGAAACTTCACAGAAGATAGAGTCATAGGAAAGGGTGGATTTGGAACAGTGTATAGAGGAGTGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAATTGAGGGTGAAAAAGAATTCAAAGCTGAAATGAAGGTTCTGAGTGGTCATGAATTTGGCTGGCCTCATCCAAACCTTGTCACTCTCTATGGGTGGTGCCTGCATGGTTCACAGAAGATACTGGTTTATGAGTACATAGGAGGTGGAAGCTTAGAGGATCTTGTGACTGATACAACAAAGTTAACATGGAGGAGGCGCCTAGAAGTGGCAATTGATGTGGCTAGAGCATTAGTCTATTTACACCATGAATGTTACCCTTCTATTGTACACAGAGATGTGAAGGCTAGTAATGTATTGCTAGACAAAGATGGGAAGGCCAAAGTCACAGACTTTGGACTTGCTAGAGTTGTTAATGCTGGAGATAGTCATGTGAGTACAATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAGACATGGCAAGCTACCACAAAAGGGGATGTGTACAGTTTTGGGGTATTGGCTATGGAGCTAGCAACAGGTAGGAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGTTAGGCGTGTCACAGGTTGTGGAAGACATGGATTGAGTTACTCTGTGCCTGTTTTGTTGATGGGCTCTGGGCTAGTTGGGGGTGCAAAAGAAATGGGTAAGCTGCTACAAGTTGGGGTGAAGTGCACAGATGATACACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGTTGATTAAGATATACAATCCCATTGGAGACTCAAATTATGGGCATCTTGTTTAG 3273 0.4201 MSEQETDSWGFLLVCFLILFSGKFVAGDSLDTDKQVLLKLKSYLETQTFANKGGYINWNKNSSNPCEWSGISCSLFNGTTWRVVSVDISASEIAGKIFQNFSLLTELTHLDVSWNTLSGEIPEDLRKCHKLQYLNISRNILEGELNLTGLTRLQTLDLSVNRFHGDLGLNFPAICDNLVTLNISDNYFTGRIDSCFDQCLRLQNLDLSTNNLGGGLWTGISRLREFSISENNLSGVVPSHAFPGNCSLIKLDLSVNGFVGKPPKEVANCKNLEILNLSSNNFTGDIPKEIGFISGLQSLFLQNNSFSRDIPQTLLNLSNLFILDLSRNRFGGEIQEIFGKFKQVKFLLLHSNSYTGGLKTSGIFSLTNVSRLELSFNNFSGPLPAEISQMSGLTFLSLSSNQFSGPIPSELGKLTHLLGLDLSSNSFSGPIPPSLGNLSSLLWLMLAHNSLTGEIPPELGNCSSLLWLNLANNKLSGKFPSELTKIGRNAMATFESNKRSIGRVVAGNSECLSMRNWVPADYRPFSFVYTILTRKNCRALWDRLLKGYGIFPMCTYETSSRSLHSAGYVQLSGNQLTGEIPPEIGTMLNFSMLHLGDNKFSGKFPPEMVSMPLVVLNITRNKFSGEIPKGIGNMKCLQNLDLSWNNFSGKFPTSLVNLDELSRFNISYNPFISGAVPPEGHLLTFDKDSYLGDPLLDLPEFFNNITDGRNRTFHRSLKKSTKWSLCVALTLSVLVFGLLFLTVYFLVKGPSVESGYLLRDKNQGHDSSSSGSSPWLSDTVKIFHLNNTVFTHADILEATGNFTEDRVIGKGGFGTVYRGVFPDGREVAVKKLQREGIEGEKEFKAEMKVLSGHEFGWPHPNLVTLYGWCLHGSQKILVYEYIGGGSLEDLVTDTTKLTWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVNAGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWVRRVTGCGRHGLSYSVPVLLMGSGLVGGAKEMGKLLQVGVKCTDDTPQARPNMKEVLAMLIKIYNPIGDSNYGHLV 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi245g00026 1090 ProSiteProfiles Protein kinase domain profile. 802 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi245g00026 1090 SUPERFAMILY L domain-like 221 482 - -
Sebi245g00026 1090 FunFam Putative LRR receptor-like serine/threonine-protein kinase 341 502 - -
Sebi245g00026 1090 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 338 1076 - -
Sebi245g00026 1090 Gene3D Ribonuclease Inhibitor 548 710 IPR032675 -
Sebi245g00026 1090 Gene3D Phosphorylase Kinase; domain 1 768 881 - -
Sebi245g00026 1090 ProSitePatterns Protein kinases ATP-binding region signature. 808 831 IPR017441 GO:0005524
Sebi245g00026 1090 SMART LRR_typ_2 390 414 IPR003591 -
Sebi245g00026 1090 SMART LRR_typ_2 220 244 IPR003591 -
Sebi245g00026 1090 SMART LRR_typ_2 104 128 IPR003591 -
Sebi245g00026 1090 SMART LRR_typ_2 293 317 IPR003591 -
Sebi245g00026 1090 SMART LRR_typ_2 438 462 IPR003591 -
Sebi245g00026 1090 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 882 1081 - -
Sebi245g00026 1090 Gene3D Ribonuclease Inhibitor 29 172 IPR032675 -
Sebi245g00026 1090 Gene3D Transferase(Phosphotransferase) domain 1 883 1084 - -
Sebi245g00026 1090 SUPERFAMILY Protein kinase-like (PK-like) 783 1075 IPR011009 -
Sebi245g00026 1090 Pfam Leucine Rich Repeat 177 199 IPR001611 GO:0005515
Sebi245g00026 1090 SMART serkin_6 802 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi245g00026 1090 Pfam Protein kinase domain 802 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi245g00026 1090 FunFam Leucine-rich repeat receptor protein kinase MSP1 765 881 - -
Sebi245g00026 1090 Pfam Leucine rich repeat 222 282 IPR001611 GO:0005515
Sebi245g00026 1090 SUPERFAMILY RNI-like 69 287 - -
Sebi245g00026 1090 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Sebi245g00026 1090 SUPERFAMILY L domain-like 560 674 - -
Sebi245g00026 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Sebi245g00026 1090 Gene3D Ribonuclease Inhibitor 323 509 IPR032675 -
Sebi245g00026 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 239 334 - -
Sebi245g00026 1090 Pfam Leucine Rich repeat 107 120 IPR001611 GO:0005515
Sebi245g00026 1090 CDD STKc_IRAK 808 1077 - -
Sebi245g00026 1090 Gene3D Ribonuclease Inhibitor 173 244 IPR032675 -
Sebi245g00026 1090 Gene3D Ribonuclease Inhibitor 245 317 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi245g00026 Sebi-Chr245 461015 464562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi245g00026 83 1074 Receptor kinase-like Gene Family AT1G55610 32.888 2.57e-145 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Sebi245g00026 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi245g00026 - - gmx:100813425 1730.3