Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi245g00025 ATGGATTGTAGCGGTAAGAAGGAGGAAAATACAATGCCAGTGGAGCTAGCAATCCAGAGGGAGCTGGTATATAGGAGGAAGGTAGCAGCATCTCACTTGGGCCCAAATAATGATTCCATTGAAGAGATTCTTCCATTGCAGCAGGTTAAATCATCAAACCAAGCTTCCCACCCAATGCCATTGTCAAGTCCAAGTTCATGGCAATTTTCAAGTTCAAACCTTTCAGGAACTAAGAGAAAGGAATTACCAACAAGCAGTGCTCATTATCCTCCTTTGCAACATCAACAACCATTTCATGGCAGTCTCAATCACAAAGCTAACACAGATAGTTTAAACTGTGAAATCTGTCAAGTATCTTGCTCAAGTCCATTCAATCTCAAGCAACATTTAATCGGTTCCAATCACCAGAAAAAATTGAGTGAGAAAACTGGAAGTGAGGGCAGAAGCAATCAGAGGCAATGGTGTGAACTGTGTAAAGTTTCATGTATGAGTGAAGACTTGCTCAAGCTGCACTTTCAAGGTCATAGGCATAAGGTTAATTTGCAGAACTTGGAAATTAGTAAGCACGGTGGGGAGGCTCCATATAAACAAAAATGGTGTGAACTATGCAAATTGTGGTGCATTAATGAGTTTTCCTTCAAGCAGCATCTTGAAGGTAAAAAGCACATCATTCAACTGCATGCTATGGAGAAAACCATAAAAGAGAAGAATGAAGTGACATTGTGA 726 0.4036 MDCSGKKEENTMPVELAIQRELVYRRKVAASHLGPNNDSIEEILPLQQVKSSNQASHPMPLSSPSSWQFSSSNLSGTKRKELPTSSAHYPPLQHQQPFHGSLNHKANTDSLNCEICQVSCSSPFNLKQHLIGSNHQKKLSEKTGSEGRSNQRQWCELCKVSCMSEDLLKLHFQGHRHKVNLQNLEISKHGGEAPYKQKWCELCKLWCINEFSFKQHLEGKKHIIQLHAMEKTIKEKNEVTL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi245g00025 241 Pfam Zinc-finger of C2H2 type 199 222 - -
Sebi245g00025 241 Pfam Zinc-finger of C2H2 type 112 135 - -
Sebi245g00025 241 Pfam Zinc-finger of C2H2 type 154 177 - -
Sebi245g00025 241 SUPERFAMILY beta-beta-alpha zinc fingers 146 184 IPR036236 -
Sebi245g00025 241 SUPERFAMILY beta-beta-alpha zinc fingers 107 142 IPR036236 -
Sebi245g00025 241 MobiDBLite consensus disorder prediction 50 103 - -
Sebi245g00025 241 SMART c2h2final6 153 175 IPR013087 -
Sebi245g00025 241 SMART c2h2final6 198 222 IPR013087 -
Sebi245g00025 241 SMART c2h2final6 111 135 IPR013087 -
Sebi245g00025 241 PANTHER OS06G0651300 PROTEIN-RELATED 71 146 - -
Sebi245g00025 241 SUPERFAMILY beta-beta-alpha zinc fingers 185 227 IPR036236 -
Sebi245g00025 241 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Sebi245g00025 241 SMART ZnF_U1_5 108 142 IPR003604 GO:0003676|GO:0008270
Sebi245g00025 241 SMART ZnF_U1_5 150 184 IPR003604 GO:0003676|GO:0008270
Sebi245g00025 241 Gene3D Classic Zinc Finger 145 193 - -
Sebi245g00025 241 Gene3D Classic Zinc Finger 101 144 - -
Sebi245g00025 241 Gene3D Classic Zinc Finger 194 234 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi245g00025 34 233 C2H2 Transcription Factor Family AT5G61190 25.200 1.71e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi245g00025 zf-met 3.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi245g00025 - - lang:109356456 247.669