Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi245g00021 ATGTACTTGAAGTTCAGGTCTATTTATGATGAGGTTGCAGAGCTTATATGGGAAAATGGCCAGCTATCTACACATGGGCTTGGTGGGCTTCATCAGGAAAAGCCCACATTGAGCAGAGCCCGTGACACATTAGAGTCTATTGTTCAACAAGCCACATGCCACCATCAAAAGTCAAAGCTCATCATGGAAGACCATGCCCCTACAAGTATAAGCTCCATTGCTGCATCCTCCGGTGAGCAACACACGGTTCCAACGTTGTCAAGGAAGAGAGCATGGTCAAATTCCGGTTACAGTGTTAGAAGAAATAATGTTTGTGACGACACAAACATGGTAGAAGAATGTGGCCTCCCAAGTGGTTGTGCTAGTGCTGGTAAGGACAATGATACAACCATGATGACATGGACTTCTCTTGAATCTGGTAGAAGCTTCAAGAATATTAAAACTCTTGAAGAACATTCCGCTTGTCGATGTGAATCGGATATCCGAGAAAATCAAGATGACTACAGAGATAGCAAAGCAGAAACTGCAGGGCAAACCAATTCAAAAAGACGAAATAGAACTGCTGCTACCCATAATCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAAGTTGGTGCCTAATGCAAGTAAGACAGATAAAGCTTCAATGTTGGATGAGGTAATTAACTACTTAAAACAGCTTCAAGCACAGATCCAAATGATGAATATGACAAGCATGCCACAGATGATGGTGCCTTTAGCTATGCAACAACAACTTCAAATGTCTATGTTAGCCAGAATGAGTGGTGGTCTTGGCATGGGAATGGTTAACATGGCAGCACAAACAGGTGCTCCAAGGTCATTCCCACAACTCATTCAATCAACAACAGTTGGAGCTGTCACTGCCCCAATATTTGTTCCCCCAACTTTTATGATGCCTTCTTTGGTTCAAGCACGTGCCCCTGCATCTCCAAAGCCTGAACCTGCATCTTCAGGCACTAATCCATACAGCACTAGTCTCACACAATCAGTGAATATGGATATCCTCAACAGCATGGCAGCACTTTATCGGCAACAGATGAGTCAGAACAATCACGCATTGAGCAGCAACAAAGTCCCAAATACGCCATGA 1134 0.4347 MYLKFRSIYDEVAELIWENGQLSTHGLGGLHQEKPTLSRARDTLESIVQQATCHHQKSKLIMEDHAPTSISSIAASSGEQHTVPTLSRKRAWSNSGYSVRRNNVCDDTNMVEECGLPSGCASAGKDNDTTMMTWTSLESGRSFKNIKTLEEHSACRCESDIRENQDDYRDSKAETAGQTNSKRRNRTAATHNQSERKRRDRINQKMKALQKLVPNASKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMSGGLGMGMVNMAAQTGAPRSFPQLIQSTTVGAVTAPIFVPPTFMMPSLVQARAPASPKPEPASSGTNPYSTSLTQSVNMDILNSMAALYRQQMSQNNHALSSNKVPNTP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi245g00021 377 MobiDBLite consensus disorder prediction 318 340 - -
Sebi245g00021 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Sebi245g00021 377 Coils Coil 192 212 - -
Sebi245g00021 377 MobiDBLite consensus disorder prediction 161 200 - -
Sebi245g00021 377 MobiDBLite consensus disorder prediction 161 179 - -
Sebi245g00021 377 Gene3D - 180 246 IPR036638 GO:0046983
Sebi245g00021 377 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Sebi245g00021 377 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 366 IPR031066 -
Sebi245g00021 377 SMART finulus 192 241 IPR011598 GO:0046983
Sebi245g00021 377 CDD bHLH_AtPIF_like 186 248 IPR047265 -
Sebi245g00021 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi245g00021 Sebi-Chr245 390475 393874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi245g00021 11 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.509 1.82e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi245g00021 HLH 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi245g00021 - - gmx:102667566 387.882